| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4541673 = | 49 (0.980) | 5 (0.110) | 3/92 | NT | 10.0% | coding (602/981 nt) | yjhS | conserved hypothetical protein |
| ? | AP009048 | 4541697 = | 46 (1.020) | coding (578/981 nt) | yjhS | conserved hypothetical protein | |||||
GCAAAACCACGGCGCGTCAGTAATATTATTAAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCTTGCAT > AP009048/4541603‑4541743 | gcAAAACCACGGCGCGTCAGTAATATTATTAAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCtt > 1:107717/1‑71 (MQ=255)gcAAAACCACGGCGCGTCAGTAATATTATTAAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCtt > 1:1360527/1‑71 (MQ=255) cAAAACCACGGCGCGTCAGTAATATTATTAAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCtt > 1:3936101/1‑70 (MQ=255) ccACGGCGCGTCAGTAATATTATTAAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCa > 1:1683170/1‑71 (MQ=255) cctcggcgcatgctggatgcaaggcgaatttgacttaatgaccagtgactacgcgtcacacccTCaa > 1:1992890‑M1/64‑67 (MQ=255) aCGGCGCGTCAGTAATATTATTAAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCata > 1:961836/1‑71 (MQ=255) cGGCGCGTCAGTAATATTATTAAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCa < 1:3616768/64‑1 (MQ=255) cgTCAGTAATATTATTAAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCat < 1:2874393/64‑1 (MQ=255) cgTCAGTAATATTATTAAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTa < 1:1409165/71‑1 (MQ=255) cgTCAGTAATATTATTAAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTa < 1:2650461/71‑1 (MQ=255) gctggatgcaaggcgaatttgacttaatgaccagtgactacgcgtcacacccTc < 1:4001328‑M1/2‑1 (MQ=255) gctggatgcaaggcgaatttgacttaatgaccagtgactacgcgtcacacccTc < 1:3996183‑M1/2‑1 (MQ=255) gctggatgcaaggcgaatttgacttaatgaccagtgactacgcgtcacacccTc < 1:3569788‑M1/2‑1 (MQ=255) gctggatgcaaggcgaatttgacttaatgaccagtgactacgcgtcacacccTCaa < 1:3799035‑M1/4‑1 (MQ=255) aaTATTATTAAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGtt > 1:3617096/1‑71 (MQ=255) atatTATTAAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTc > 1:3630900/1‑50 (MQ=255) tattatTAAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGtt < 1:587816/69‑1 (MQ=255) tattatTAAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGa < 1:3480989/71‑1 (MQ=255) ttattaAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCACCCata > 1:862681/1‑54 (MQ=255) ttattaAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAgg < 1:239327/71‑1 (MQ=255) ttattaAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAgg > 1:2195075/1‑71 (MQ=255) ttattaAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAgg < 1:3815605/71‑1 (MQ=255) ttattaAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAgg > 1:985799/1‑71 (MQ=255) gcaaggcgaatttgacttaatgaccagtgactacgcgtcacacccTCaa < 1:4477340‑M1/4‑1 (MQ=255) tattaAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAggg > 1:3522936/1‑71 (MQ=255) tattaAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAggg > 1:3395992/1‑71 (MQ=255) caaggcgaatttgacttaatgaccagtgactacgcgtcacacccTCAACCATATTATTAAAGTGTTGa > 1:476178‑M1/45‑68 (MQ=255) attaAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTc < 1:3119217/45‑1 (MQ=255) attaAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGa > 1:2204510/1‑67 (MQ=255) ttaAGCTGAGAATGGTATTGTTTTAGATCCCTAGGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGgtg > 1:362509/1‑71 (MQ=255) ttaAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTa < 1:2915587/57‑1 (MQ=255) aaGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGgtgt < 1:1579328/70‑1 (MQ=255) aaGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGgtgt < 1:1162256/70‑1 (MQ=255) aGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGgtgt < 1:4431553/69‑1 (MQ=255) gaatttgacttaatgaccagtgactacgcgtcacacccTCAACCATATGATTAAAGTGtt > 1:979902‑M1/39‑60 (MQ=255) gaatttgacttaatgaccagtgactacgcgtcacacccTCAACCATATGATTAAAGTGtt > 1:980036‑M1/39‑60 (MQ=255) gCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGa > 1:3534547/1‑62 (MQ=255) agaATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTaa < 1:2573726/50‑1 (MQ=255) gaATGGTATTGGTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGAcgcg > 1:3612375/1‑69 (MQ=255) tATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCAc < 1:1588191/70‑1 (MQ=255) aTTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTg > 1:1629370/1‑71 (MQ=255) ttGTTTTAGATCCCTACGAAAGGCTTCAACCATATGAt < 1:3688422/38‑1 (MQ=255) gTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAg < 1:2169246/41‑1 (MQ=255) gTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGa > 1:4023653/1‑55 (MQ=255) gTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTc < 1:2690649/64‑1 (MQ=255) ttttAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGa > 1:1642130/1‑46 (MQ=255) ttAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCa > 1:2905700/1‑62 (MQ=255) aGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTa > 1:4267207/1‑70 (MQ=255) aGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTa < 1:1155471/70‑1 (MQ=255) gATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTaa < 1:2993288/70‑1 (MQ=255) gATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAg < 1:2558274/71‑1 (MQ=255) aTCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGgtgt < 1:1979894/46‑1 (MQ=255) aTCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTaa < 1:2469763/69‑1 (MQ=255) aTCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTaa < 1:2475208/69‑1 (MQ=255) tacgcgtcacacccTCAACCATATGATTAAAGTGTTGa < 1:560326‑M1/24‑1 (MQ=255) tacgcgtcacacccTCAACCATATGATTAAAGTGTTGa < 1:3060711‑M1/24‑1 (MQ=255) ccTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCa < 1:3297249/70‑1 (MQ=255) cTAGGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCaaa < 1:4188849/71‑1 (MQ=255) cTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGgtg < 1:610651/41‑1 (MQ=255) cTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCa > 1:3333262/1‑61 (MQ=255) tACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCTTATTCACTGGt < 1:467890/58‑1 (MQ=255) tACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCa < 1:1141908/53‑1 (MQ=255) tACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGt < 1:3893423/58‑1 (MQ=255) aCGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAAtt > 1:3385089/1‑71 (MQ=255) cGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGtgtg > 1:989526/1‑40 (MQ=255) cGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTaa > 1:4573479/1‑62 (MQ=255) aGGCTTCAACCATATGATTAAAGTGTTGAGGGTGAGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCt > 1:3607294/1‑71 (MQ=255) ggCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCtt > 1:3847999/1‑71 (MQ=255) ggCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCtt > 1:3463523/1‑71 (MQ=255) ggCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCtt < 1:2844128/71‑1 (MQ=255) gCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCTTg < 1:388572/71‑1 (MQ=255) cTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAg < 1:1844591/56‑1 (MQ=255) ttCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTa < 1:274135/39‑1 (MQ=255) ttCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTg > 1:887152/1‑46 (MQ=255) TCAACCATATGATTAAAGTGTTGAGGGTGTGAcgc > 1:3631695‑M1/1‑35 (MQ=255) TCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTc < 1:4280790‑M1/56‑1 (MQ=255) TCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCTTGCAt < 1:89708‑M1/71‑1 (MQ=255) TCAACCATATGATTAAAGTGTTGAGGGTGTGACCCGTAGTCACTGGTCATTAAGTCAAATTCGCCTTGCAt < 1:124950‑M1/71‑1 (MQ=255) | GCAAAACCACGGCGCGTCAGTAATATTATTAAGCTGAGAATGGTATTGTTTTAGATCCCTACGAAAGGCTTCAACCATATGATTAAAGTGTTGAGGGTGTGACGCGTAGTCACTGGTCATTAAGTCAAATTCGCCTTGCAT > AP009048/4541603‑4541743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |