| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 39915 = | 49 (0.980) | 4 (0.090) | 3/92 | NT | 8.3% | coding (472/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding |
| ? | AP009048 | 39938 = | 44 (0.980) | coding (449/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding | |||||
AGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTACCCACGTCGGAGCCCGCGCCC > AP009048/39868‑40006 | aGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCAt < 1:2831217/71‑1 (MQ=255) cctgaaaacgacttatacccgtagaaatggtaagatttatcttaaTGGTAATAAAACACTTACTACCAt > 1:115925‑M1/46‑69 (MQ=255) ccGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCAt > 1:4336027/1‑67 (MQ=255) cGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCAt > 1:2052212/1‑66 (MQ=255) gcCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCt > 1:3634928/1‑70 (MQ=255) ccATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTa < 1:1314130/71‑1 (MQ=255) ccATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTa < 1:3018168/71‑1 (MQ=255) cATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTaa > 1:608417/1‑59 (MQ=255) cATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTAc > 1:304979/1‑71 (MQ=255) aTCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTAc > 1:4612820/1‑70 (MQ=255) aTCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTAc > 1:4339495/1‑70 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTAc > 1:2234883/1‑69 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCa > 1:1453891/1‑71 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCa > 1:4105214/1‑71 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCa > 1:3589858/1‑71 (MQ=255) accacGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCAtt > 1:4481212/1‑71 (MQ=255) ccacGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATaa < 1:3672003/59‑1 (MQ=255) cacGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:4312013/1‑71 (MQ=255) acGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:2053991/1‑70 (MQ=255) cGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCAt > 1:3415085/1‑66 (MQ=255) cGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTa > 1:96179/1‑71 (MQ=255) cGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTa > 1:3384904/1‑71 (MQ=255) tACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTAc > 1:3534057/1‑58 (MQ=255) tACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGt < 1:3194909/71‑1 (MQ=255) cGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGtat < 1:4386230/71‑1 (MQ=255) cGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGtat < 1:581549/71‑1 (MQ=255) cGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGtat < 1:2238544/71‑1 (MQ=255) ggTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAg < 1:3953924/71‑1 (MQ=255) gtgtAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATaa < 1:554921/69‑1 (MQ=255) tAGGCGCTGCTGGTAATAAAACACTTAATACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGt < 1:2532777/71‑1 (MQ=255) ggCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtt < 1:4317787/70‑1 (MQ=255) gcgcTGCTGGTGATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtt < 1:2796667/69‑1 (MQ=255) gcgcTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtttt > 1:2320017/1‑71 (MQ=255) gcgcTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtttt < 1:183275/71‑1 (MQ=255) gcgcTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtttt < 1:825165/71‑1 (MQ=255) gcgcTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtttt < 1:3726406/71‑1 (MQ=255) gcgcTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtttt < 1:4348925/71‑1 (MQ=255) gctgGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:1402226/1‑47 (MQ=255) gctgGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:2958107/1‑47 (MQ=255) gctgGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGc > 1:1632159/1‑71 (MQ=255) ctgGTAATAAAACACTTACTACCATTAAGATAAATCTTACCAttt > 1:527988/1‑45 (MQ=255) atggtagtaagtgttttattaccaTTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAgg > 1:115925‑M2/25‑69 (MQ=255) tggtagtaagtgttttattaccaTTAAGATAAATCTTACCATTTCTACGGGTATaa > 1:1129623‑M2/24‑56 (MQ=255) tggtagtaagtgttttattaccaTTAAGATAAATCTTACCATTTCTACGGGTATaa > 1:3829255‑M2/24‑56 (MQ=255) TGGTAATAAAACACTTACTACCATTAAGATAAATc > 1:3986228‑M1/1‑35 (MQ=255) TGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTc < 1:93343‑M1/65‑1 (MQ=255) GTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTAcc < 1:2366161‑M1/71‑1 (MQ=255) GTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTAcc < 1:1960043‑M1/71‑1 (MQ=255) GTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTAc > 1:145801‑M1/1‑70 (MQ=255) TAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTAcc < 1:3326324‑M1/70‑1 (MQ=255) AATAAAACACTTACTACCATTAAGATAAATCTTACCAtt < 1:973587‑M1/39‑1 (MQ=255) AATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:4395858‑M1/1‑41 (MQ=255) AATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTACCCa < 1:816800‑M1/71‑1 (MQ=255) gtaagtgttttattaccaTTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtttt < 1:4001500‑M2/41‑1 (MQ=255) aaaaCACTTACTACCATTAAGATAAATCTTACCATTTCTACgg > 1:3559103/1‑43 (MQ=255) aaaCACTTACTACCATTAAGATAAATCTTACCATTTCTACgg > 1:2133334/1‑42 (MQ=255) aaaCACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTAcc > 1:2728974/1‑65 (MQ=255) aaaCACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTACCCACGTc > 1:266500/1‑71 (MQ=255) aaCACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTACCCACGTCg < 1:1989757/71‑1 (MQ=255) acacTTACTACCATTAAGATAAATCTTACCATTTc < 1:2968222/35‑1 (MQ=255) acacTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCa > 1:315657/1‑56 (MQ=255) acacTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTACCCACGTCg > 1:1657648/1‑70 (MQ=255) cTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTACCCACGTCGGAGc < 1:4092156/71‑1 (MQ=255) ttACTACCATTAAGATAAATCTTACCATTTCTACg > 1:144962/1‑35 (MQ=255) ttACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCa > 1:4324853/1‑52 (MQ=255) ttACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTACCCAc < 1:1750586/62‑1 (MQ=255) taccaTTAAGATAAACCTTACCATTTCTACGGGTATAAg < 1:4418050‑M2/34‑1 (MQ=255) ccaTTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGtttt < 1:1863055‑M2/41‑1 (MQ=255) ccaTTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGttt > 1:4155411‑M2/4‑43 (MQ=255) ccaTTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCa > 1:4401924‑M2/4‑46 (MQ=255) caTTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTACCCACGTCGGAGCCCGCGccc < 1:1692508‑M2/69‑1 (MQ=255) ttAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTc < 1:3867736/42‑1 (MQ=255) ttAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCa > 1:3141157/1‑43 (MQ=255) | AGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGTTTTCAGGCTACCCACGTCGGAGCCCGCGCCC > AP009048/39868‑40006 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |