New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AP009048 | = 274373 | NA (NA) | 57 (1.140) | 38/102 | NT | 100% | intergenic (‑32/‑176) | insH/mmuP | IS5 transposase and trans‑activator/predicted S‑methylmethionine transporter |
? | AP009048 | 576000 = | 0 (0.000) | pseudogene (109/1128 nt) | nmpC | DLP12 prophage region; ECK0544:JW5078:b0553; truncated outer membrane porin |
Only 100 of 124 total aligned reads displayed.
ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAACT > AP009048/575930‑576069 | atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:887077‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3667698‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3433778‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:2955953‑M2/1‑1 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:4238129‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:4255660‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2514664‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2140417‑M2/71‑71 (MQ=255) atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:4358601‑M2/71‑71 (MQ=255) aagatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcacattcct > 1:3610659‑M2/71‑71 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2546904‑M2/2‑1 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:2781842‑M2/2‑1 (MQ=255) tgatgaaccctgttctagggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:189671‑M2/2‑1 (MQ=255) gatgaaccctgttctatggctccagctgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:730285‑M2/69‑69 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2531036‑M2/69‑69 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1017146‑M2/1‑1 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:4491387‑M2/69‑69 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:3618656‑M2/69‑69 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:3990019‑M2/68‑70 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:2600650‑M2/3‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:2050244‑M2/4‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:3867004‑M2/4‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:2732788‑M2/4‑1 (MQ=255) atgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:2546322‑M2/4‑1 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:4510778‑M2/67‑70 (MQ=255) gaaccctgttctatggctacagatgacaaaaatgatctcatatcagggacttgttcgcaccttccTTAg < 1:4086193‑M2/4‑1 (MQ=255) aaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt < 1:3220052‑M2/2‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:638621‑M2/8‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:1126612‑M2/8‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:2291940‑M2/8‑1 (MQ=255) accctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:3532969‑M2/8‑1 (MQ=255) ccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTg < 1:2633109‑M2/9‑1 (MQ=255) gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcct > 1:2518236‑M2/59‑59 (MQ=255) gttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGa > 1:1048873‑M2/59‑68 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:4177690‑M2/3‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:2865525‑M2/3‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:4330336‑M2/58‑61 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATg > 1:2450692‑M2/58‑69 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATg < 1:1794044‑M2/12‑1 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATg > 1:2116806‑M2/58‑69 (MQ=255) tctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:2869608‑M2/3‑1 (MQ=255) tctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:2169971‑M2/57‑60 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:390349‑M2/54‑55 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa > 1:4274050‑M2/54‑56 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGc < 1:1489651‑M2/13‑1 (MQ=255) tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCt < 1:3990505‑M2/17‑1 (MQ=255) gctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACGGATGCAg > 1:3757170‑M2/51‑65 (MQ=255) ctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg < 1:3640021‑M2/4‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTa > 1:4140194‑M2/47‑52 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcagcag < 1:3107329‑M2/24‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTAcagca < 1:4450869‑M2/23‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGa < 1:2256564‑M2/25‑1 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccTTa < 1:4184890‑M2/3‑1 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACt > 1:3060503‑M2/46‑53 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttcct < 1:4125635‑M2/1‑1 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:300995‑M2/45‑71 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:1901243‑M2/45‑71 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGaaa > 1:1575614‑M2/45‑71 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg > 1:4167009‑M2/44‑47 (MQ=255) atgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAt < 1:1929419‑M2/28‑1 (MQ=255) gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGc > 1:3381937‑M2/42‑57 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttcctt > 1:91839‑M2/41‑42 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1015922‑M2/1‑1 (MQ=255) acaaacatgatctcatatcagggacttgttcgcaccttcct < 1:1705573‑M2/1‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttcct > 1:43998‑M2/39‑39 (MQ=255) aacatgatctcatatcagggacttcttcgcaccttccTTAGTACTGATGCAGc < 1:791734‑M2/16‑1 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCa > 1:3860243‑M2/37‑69 (MQ=255) catgatctcatatcagggacttgttcgcaccttcctt < 1:545310‑M2/2‑1 (MQ=255) atgatctcatatcagggacttgttcgcaccttcctt > 1:402574‑M2/35‑36 (MQ=255) atgatctcatatcagggacttgttcgcaccttccTTa > 1:3523613‑M2/35‑37 (MQ=255) gatctcatatcagggacttgttcgcaccttccTTAGTACt < 1:3387658‑M2/8‑1 (MQ=255) atctcatatcagggacttgttcgcaccttccTTAg > 1:1762647‑M2/32‑35 (MQ=255) atctcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTa < 1:1200249‑M2/39‑1 (MQ=255) tcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCt < 1:3382505‑M2/17‑1 (MQ=255) tcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTa > 1:235259‑M2/29‑46 (MQ=255) tcatatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGt < 1:4296491‑M2/37‑1 (MQ=255) catatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt > 1:6091‑M2/28‑71 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttttt > 1:3444734‑M2/27‑71 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttttt < 1:2585843‑M2/45‑1 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttt < 1:1015719‑M2/44‑1 (MQ=255) atatcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAttt < 1:1185358‑M2/43‑1 (MQ=255) tcagggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCa > 1:3741666‑M2/24‑71 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAAtt > 1:4070740‑M2/20‑48 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtt < 1:2895972‑M2/42‑1 (MQ=255) ggacttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGt < 1:321684‑M2/52‑1 (MQ=255) ttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTg < 1:3278641‑M2/53‑1 (MQ=255) ttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTg > 1:4089677‑M2/16‑68 (MQ=255) ttgttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGc > 1:3811543‑M2/16‑71 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTAcagcag > 1:2817877‑M2/14‑37 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTAcagcag > 1:4569256‑M2/14‑37 (MQ=255) gttcgcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGccc > 1:4101719‑M2/14‑71 (MQ=255) gttcgcaccttccTTAGTACTGATGAAGCTAcagcag > 1:3336299‑M2/14‑37 (MQ=255) gcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTg < 1:2598491‑M2/36‑1 (MQ=255) gcaccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTg < 1:4028412‑M2/36‑1 (MQ=255) ccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttttt < 1:2766218‑M2/46‑1 (MQ=255) ccttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCttttttt > 1:1002690‑M2/7‑71 (MQ=255) ttccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAAtttttt < 1:1296422‑M2/46‑1 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGaa > 1:511717‑M2/4‑71 (MQ=255) tccTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGaa > 1:2788089‑M2/4‑71 (MQ=255) cTTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAACt < 1:4561376‑M2/70‑1 (MQ=255) | ACTTTCCCGTACAGATCCAGCTTGTTACTGTCTTTATTATAAATTTCAGCTGCCTGAGCAGACATCGCCATTAGTACTGATGCAGCTACAGCAGAAATTGCCACTGTTAATTTTTTCATCGTGAGCCCTTTTTTTGAACT > AP009048/575930‑576069 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |