| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 314453 = | 42 (0.840) | 85 (1.810) +TCA |
49/96 | NT | 81.1% | coding (873/888 nt) | eaeH | attaching and effacing protein, pathogenesis factor |
| ? | AP009048 | = 3920279 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 236 total aligned reads displayed.
AGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > AP009048/3920210‑3920348 | cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:3119395‑M2/67‑70 (MQ=255) ggCCACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt < 1:3464178‑M2/70‑2 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacactt > 1:382816‑M2/66‑69 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacactt > 1:335050‑M2/66‑69 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt > 1:4110192‑M2/66‑71 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACActtcggt < 1:1551022‑M2/10‑4 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:4129088‑M2/62‑70 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:3508948‑M2/9‑1 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:2805375‑M2/62‑70 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct > 1:2310282‑M2/1‑65 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc > 1:2786585‑M2/1‑65 (MQ=255) ggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:962992‑M2/61‑69 (MQ=255) ggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:3788191‑M2/61‑69 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTtcg < 1:1600307‑M2/8‑2 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:326637‑M2/71‑11 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:3130295‑M2/71‑11 (MQ=255) acaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTTc < 1:740947‑M2/7‑1 (MQ=255) atttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCa < 1:1732468‑M2/17‑1 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac > 1:2831660‑M2/54‑57 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCAt > 1:3677463‑M2/54‑71 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccag > 1:137035‑M2/1‑57 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATc > 1:3893615‑M2/52‑70 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:1002278‑M2/1‑52 (MQ=255) aaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt > 1:2597158‑M2/49‑69 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:2825029‑M2/24‑1 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAgg < 1:2019941‑M2/25‑1 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAgg < 1:4017353‑M2/25‑1 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTTc > 1:2994445‑M2/45‑51 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:4216680‑M2/9‑1 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt > 1:4066135‑M2/44‑71 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt > 1:3591772‑M2/44‑71 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaaaagtggaca < 1:768641‑M2/71‑26 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg > 1:3688809‑M2/43‑49 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac > 1:4490030‑M2/1‑45 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggaca < 1:2085149‑M2/70‑26 (MQ=255) gaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:1272614‑M2/60‑17 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg < 1:3018360‑M2/9‑3 (MQ=255) aTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAacac > 1:3059139/1‑43 (MQ=255) ctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatga < 1:583716‑M2/33‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGa > 1:1146185‑M2/38‑63 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaag > 1:1906961‑M2/37‑71 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt > 1:2705148‑M2/36‑56 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:2525567‑M2/1‑38 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggct > 1:4352911‑M2/1‑38 (MQ=255) aCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa > 1:898424‑M2/1‑36 (MQ=255) cATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:3412428‑M2/1‑34 (MQ=255) cATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:1297252‑M2/1‑34 (MQ=255) gcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg > 1:1645368‑M2/30‑53 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt < 1:3043923‑M2/69‑37 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgag < 1:2417949‑M2/71‑40 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTag < 1:717924‑M2/12‑1 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:620353‑M2/29‑1 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagcc > 1:4449521‑M2/28‑64 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat > 1:1322958‑M2/1‑29 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatga > 1:2366174‑M2/25‑57 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt < 1:2927068‑M2/46‑1 (MQ=255) cTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:4292281‑M2/46‑20 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:3218315‑M2/23‑70 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt < 1:1925597‑M2/48‑1 (MQ=255) ccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:4570220‑M2/22‑69 (MQ=255) gatatttcgtgtgtaggatcACACTTATTTAGAGCCATCGTCAGGa < 1:3935743‑M2/26‑1 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaac > 1:1450794‑M2/1‑24 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaa > 1:1627197‑M2/21‑54 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:574061‑M2/21‑71 (MQ=255) atattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaagc > 1:4024209‑M2/20‑61 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCg < 1:314375‑M2/53‑1 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCg > 1:1838475‑M2/19‑71 (MQ=255) tAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca > 1:1040553‑M2/1‑22 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctca < 1:3544796‑M2/70‑50 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:4505594‑M2/1‑21 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCa > 1:2042982‑M2/17‑66 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:1992193‑M2/17‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt < 1:110078‑M2/55‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt < 1:291043‑M2/55‑1 (MQ=255) agagAAGTGTACGAACACttatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtca > 1:238912‑M2/1‑18 (MQ=255) cgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg < 1:215238‑M2/56‑1 (MQ=255) agaAGTGTACGAACACtgatcttacccagcaatagtggaca < 1:3309464‑M2/41‑26 (MQ=255) tgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCtt > 1:694035‑M2/12‑56 (MQ=255) gaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag < 1:3754613‑M2/65‑51 (MQ=255) gggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg > 1:4389043‑M2/11‑48 (MQ=255) aaGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt < 1:510293‑M2/50‑37 (MQ=255) gtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCAGAAGCCTTTGTCAGCGTTGAACCAtt < 1:103468‑M2/63‑1 (MQ=255) tgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtga > 1:4587387‑M2/1‑11 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgact < 1:811582‑M2/71‑63 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:2242276‑M2/1‑9 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:1507318‑M2/6‑36 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTa > 1:176945‑M2/6‑71 (MQ=255) gAACACtgatcttacccagcaatagtggacacgcggctaag < 1:495649‑M2/41‑36 (MQ=255) tcactgatcttacccagcaatagtggacacgcggctaag < 1:4247603‑M2/38‑36 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGa > 1:3110624/1‑56 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatga < 1:1660366‑M2/71‑70 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga > 1:1155676‑M2/1‑2 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:704695‑M2/1‑2 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtc < 1:3962835‑M2/54‑53 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaact < 1:121437‑M2/47‑46 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaa > 1:4345860‑M2/1‑2 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactca < 1:2535876‑M2/65‑65 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagag > 1:4420630‑M2/1‑1 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaa > 1:1964418‑M2/1‑1 (MQ=255) caTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGaa > 1:2967215/1‑55 (MQ=255) | AGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > AP009048/3920210‑3920348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |