| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 663844 | 39 (0.780) | 4 (0.090) | 4/88 | NT | 9.7% | coding (542/1212 nt) | dacA | D‑alanyl‑D‑alanine carboxypeptidase |
| ? | AP009048 | = 663852 | 41 (0.950) | coding (534/1212 nt) | dacA | D‑alanyl‑D‑alanine carboxypeptidase | |||||
TCAATGCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCT > AP009048/663782‑663922 | tCAATGCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTAcc > 1:1162474/1‑71 (MQ=255)tCAATGCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTAcc > 1:3997004/1‑71 (MQ=255) cAATGCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCg < 1:1783628‑M2/71‑2 (MQ=255) tGCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCgtct > 1:3731461‑M2/1‑67 (MQ=255) gCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCgtctg < 1:1876919‑M2/71‑6 (MQ=255) gCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCgtctg < 1:1752919‑M2/71‑6 (MQ=255) cTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCgtctgga > 1:3698876‑M2/1‑64 (MQ=255) gCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGaa < 1:2250944/69‑1 (MQ=255) ccGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTg > 1:2814068/1‑71 (MQ=255) gATCAGAGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTggg > 1:4201723/1‑71 (MQ=255) cAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTAt > 1:2686324/1‑71 (MQ=255) aGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTAtt > 1:1659796/1‑71 (MQ=255) aGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTAtt > 1:38767/1‑71 (MQ=255) gcgcCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTAttt < 1:4269906/71‑1 (MQ=255) cgcCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTAtttt < 1:4310096/71‑1 (MQ=255) gcCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTAttttt < 1:2301927/71‑1 (MQ=255) cATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTAttttt > 1:2135065/1‑69 (MQ=255) atatCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCgt < 1:495782‑M2/50‑3 (MQ=255) tctcGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTc < 1:2429974/66‑1 (MQ=255) ctcGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCgtct < 1:761384‑M2/48‑5 (MQ=255) cgcgcgGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAg > 1:3919654/1‑71 (MQ=255) gcgcgGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGcc < 1:745447/67‑1 (MQ=255) gcgcgGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGcc < 1:2716514/67‑1 (MQ=255) cgcgGAGCTGTACTGACCATCAGCATCCAGACCATCTACCGTCTGGAAGTGGGTATTTTTCAgg > 1:245960/1‑64 (MQ=255) cgGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGt < 1:3217393/48‑1 (MQ=255) cgGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCg > 1:3072491/1‑71 (MQ=255) ggAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTc < 1:4166446/58‑1 (MQ=255) cTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGc > 1:102262/1‑65 (MQ=255) tACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACg > 1:1233381/1‑69 (MQ=255) tACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACg > 1:1595474/1‑69 (MQ=255) tACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACg < 1:3769301/69‑1 (MQ=255) aCTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTAttttt < 1:3957862/49‑1 (MQ=255) cTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTa > 1:1416562/1‑69 (MQ=255) cTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGc > 1:4553378/1‑71 (MQ=255) cTGACCATCAGAATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGc > 1:4277937/1‑71 (MQ=255) ccATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGtt < 1:221483/59‑1 (MQ=255) ccATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGtt > 1:3075173/1‑71 (MQ=255) cATCAGCATCCAGACCATGTACCGTCTGGAAGTggg < 1:3322347/36‑1 (MQ=255) cATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGtt > 1:1449107/1‑70 (MQ=255) tCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAg > 1:2854127/1‑44 (MQ=255) tCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGTtcat > 1:352921/1‑71 (MQ=255) aGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGTtcatca < 1:1849901/71‑1 (MQ=255) gCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGTtcatc > 1:2789336/1‑69 (MQ=255) gCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGTTCATCaa < 1:2637537/71‑1 (MQ=255) gCATCCAGACCATGTACCGTCTGGAAGTGCGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGTTCATCaa < 1:3278627/71‑1 (MQ=255) tCCAGACCATGTACCgtctggatgctgatggtcagtacagctccgcgcgagatatggcgctgatcggccag < 1:827780‑M2/71‑57 (MQ=255) tCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGccc < 1:2906553/42‑1 (MQ=255) ccAGACCATGTACCgtctggatgctgatggtcagtacagctccgcgcgagatatggcgctgatcggc > 1:3989038‑M2/1‑14 (MQ=255) aGACCATGTACCgtctggatgctgatggtcagtacagctc < 1:4420747‑M2/40‑29 (MQ=255) aGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGTTCATCAAGCcaa > 1:1120996/1‑70 (MQ=255) gACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGTTCATCAAGCcaaca < 1:2388329/71‑1 (MQ=255) aCCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAAc < 1:2757354/48‑1 (MQ=255) aCCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGTTCATCAAGCcaacaa < 1:2968463/71‑1 (MQ=255) aCCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGTTCATCAAGCcaaca > 1:425284/1‑70 (MQ=255) ccATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGTTCATCAAGCCAACaaa < 1:2159613/71‑1 (MQ=255) aTGTACCgtctggatgctgatggtcagtacagctccgcgcgagatatggcgctgatcggccaggcattgat > 1:1064760‑M2/1‑7 (MQ=255) tGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGt > 1:2133785/1‑36 (MQ=255) aCCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTc > 1:3762850/1‑71 (MQ=255) ccGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTc < 1:2329336/70‑1 (MQ=255) cGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCt > 1:978641/1‑71 (MQ=255) | TCAATGCCTGGCCGATCAGCGCCATATCTCGCGCGGAGCTGTACTGACCATCAGCATCCAGACCATGTACCGTCTGGAAGTGGGTATTTTTCAGGCCCAGTGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCT > AP009048/663782‑663922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |