| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1395670 = | 52 (1.040) | 3 (0.070) | 3/90 | NT | 6.8% | coding (730/1614 nt) | mppA | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit |
| ? | AP009048 | 1395691 = | 36 (0.820) | coding (751/1614 nt) | mppA | murein tripeptide (L‑ala‑gamma‑D‑glutamyl‑meso‑DAP) transporter subunit | |||||
ATACCCATTATTGGGATAACGCCAAAACGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATG > AP009048/1395623‑1395756 | aTACCCATTATTGGGATAACGCCAAAACGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATcc > 1:2800152/1‑71 (MQ=255) ttGGGATAACGCCAAAACGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCAc > 1:2533091/1‑69 (MQ=255) ttGGGATAACGCCAAAACGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACt < 1:804994/70‑1 (MQ=255) ttGGGATAACGCCAAAACGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACt < 1:3027317/70‑1 (MQ=255) caatatcccccgcgaggtaacgcttagtggctgcggaTTCCTGCCAATTAATCAGGAAt < 1:3763971‑M1/22‑1 (MQ=255) ggATAACGCCAAAACGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGc > 1:4474851/1‑71 (MQ=255) gATAACGCCAAAACGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCg < 1:3061097/71‑1 (MQ=255) aTAACGCCAAAACGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGt < 1:1173914/71‑1 (MQ=255) tAACGCCAAAACGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATcc > 1:1943661/1‑55 (MQ=255) aCGCCAAAACGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATc > 1:1451046/1‑52 (MQ=255) cGCCAAAACGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTAcc > 1:69403/1‑71 (MQ=255) cAAAACGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTcg < 1:2411126/71‑1 (MQ=255) aaaaCGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTcgc > 1:4029084/1‑71 (MQ=255) aaCGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCa > 1:3335966/1‑53 (MQ=255) cGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCgggg > 1:3669152/1‑71 (MQ=255) tACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGa > 1:2910098/1‑70 (MQ=255) cTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGatat > 1:3267230/1‑71 (MQ=255) cTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGatat > 1:2656821/1‑71 (MQ=255) cTGCAAAAAGTGACCTTCCTGCCAATTAAACAGTAATCCGCAGCCACTAAGCGTTAca > 1:425787/1‑57 (MQ=39) cAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTAc > 1:3805562/1‑54 (MQ=255) cAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTAc > 1:2884502/1‑54 (MQ=255) cAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGatat < 1:2709538/68‑1 (MQ=255) cAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATAtt < 1:4308510/69‑1 (MQ=255) cAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCCCGGGGGATATTg < 1:837590/70‑1 (MQ=255) aaaaaGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGatat < 1:2818947/67‑1 (MQ=255) aaaaGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCgg > 1:2719022/1‑59 (MQ=255) aaaaGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTg > 1:520168/1‑68 (MQ=255) aaaaGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGata > 1:3123032/1‑71 (MQ=255) aaaGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGTGGATATTGa > 1:4398808/1‑68 (MQ=255) aaaGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGatat > 1:3923651/1‑71 (MQ=255) aaGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCgg < 1:3979490/57‑1 (MQ=255) aaGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGatat > 1:3607849/1‑70 (MQ=255) aGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGata < 1:2511070/62‑1 (MQ=255) tGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTcgcg < 1:454402/53‑1 (MQ=255) aCCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCg < 1:1554682/70‑1 (MQ=255) aCCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGa < 1:2340036/71‑1 (MQ=255) cTTCCTGCCAATTAATCAGGAATCCGCAGCCACTa > 1:91590/1‑35 (MQ=255) attcctgattaattggcaggaaTCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTg < 1:3763971‑M2/37‑1 (MQ=255) ttcctgattaattggcaggaaTCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGa > 1:1136389‑M2/22‑59 (MQ=255) TCCTGCCAATTAATCAGGAATCCGCAGCCACTAAg < 1:2587096‑M1/35‑1 (MQ=255) cctgattaattggcaggaaTCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATcc < 1:2671225‑M2/51‑1 (MQ=255) CCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCt < 1:1574254‑M1/71‑1 (MQ=255) TGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCt > 1:2953142‑M1/1‑69 (MQ=255) ccAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTccc > 1:2509620/1‑71 (MQ=255) cAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCAc > 1:1087688/1‑58 (MQ=255) aaTTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCggggg < 1:2348811/44‑1 (MQ=255) ttAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGaaa < 1:3104971/71‑1 (MQ=255) aTCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGaaaaa < 1:1368163/70‑1 (MQ=255) aTCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGaaaa < 1:2363918/69‑1 (MQ=255) aTCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAat < 1:3217592/71‑1 (MQ=255) tCAGGAATCCGCAGCCACTAAGCGTTACCTCGCggg < 1:3780527/36‑1 (MQ=255) aggaaTCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAatat < 1:2444637‑M2/65‑1 (MQ=255) aggaaTCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATg > 1:3388554‑M2/6‑71 (MQ=255) gaaTCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGaaa < 1:2737500‑M2/60‑1 (MQ=255) aaTCCGCAGCCACTAAGCGTTAACTCGCGGGGGATATTg < 1:3919025‑M2/37‑1 (MQ=255) tCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTcc < 1:1880350/55‑1 (MQ=255) | ATACCCATTATTGGGATAACGCCAAAACGGTACTGCAAAAAGTGACCTTCCTGCCAATTAATCAGGAATCCGCAGCCACTAAGCGTTACCTCGCGGGGGATATTGATATCACCGAATCCTTCCCGAAAAATATG > AP009048/1395623‑1395756 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |