| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1592312 | 50 (1.000) | 4 (0.100) | 3/84 | NT | 8.9% | intergenic (‑62/+256) | yneL/hipA | predicted transcriptional regulator/regulator with hipB |
| ? | AP009048 | = 1592319 | 41 (1.000) | intergenic (‑69/+249) | yneL/hipA | predicted transcriptional regulator/regulator with hipB | |||||
CCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTAT > AP009048/1592253‑1592385 | ccGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACagac > 1:339444‑M2/1‑67 (MQ=255) cTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACagacact < 1:1203057‑M2/71‑8 (MQ=255) tGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACagacactgc < 1:193783‑M2/71‑10 (MQ=255) gATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACagacactgc > 1:1574732‑M2/1‑61 (MQ=255) aTCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTgcg < 1:1282563/70‑1 (MQ=255) ccGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGct < 1:2992478/70‑1 (MQ=255) cGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGctct > 1:393147/1‑71 (MQ=255) gTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGctct > 1:2917022/1‑70 (MQ=255) tCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGctct > 1:3091315/1‑69 (MQ=255) ccTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGctct < 1:4568342/68‑1 (MQ=255) tAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACaga < 1:2271992‑M2/54‑4 (MQ=255) tAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCAt > 1:3664240/1‑71 (MQ=255) aaaTAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTa < 1:2740011/66‑1 (MQ=255) aaaTAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCAt < 1:2595740/70‑1 (MQ=255) aaaTAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATg > 1:2985833/1‑71 (MQ=255) aaTAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGct > 1:2243537/1‑61 (MQ=255) aaTAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATg < 1:2451525/70‑1 (MQ=255) aTAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACagaca < 1:2642729‑M2/53‑6 (MQ=255) aTAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACa > 1:1450468‑M2/1‑48 (MQ=255) aTAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATg < 1:3376461/69‑1 (MQ=255) aaGTAACAGCAACCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATgggg > 1:868968/1‑70 (MQ=255) aGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCa < 1:1474577/71‑1 (MQ=255) gTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACagacactg > 1:2278768‑M2/1‑44 (MQ=255) tAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAgg < 1:164385/71‑1 (MQ=255) aaCAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATggg > 1:3846687/1‑65 (MQ=255) aCAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACagacact < 1:4028112‑M2/48‑8 (MQ=255) aCAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAggg > 1:1920784/1‑70 (MQ=255) cAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAg < 1:236856/57‑1 (MQ=255) aGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAAt < 1:3780658/71‑1 (MQ=255) gCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAg < 1:3096127/65‑1 (MQ=255) aCCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAg > 1:2398993/1‑63 (MQ=255) aCCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAAc < 1:4128222/71‑1 (MQ=255) aCCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAAc > 1:4395462/1‑71 (MQ=255) aCCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAAc > 1:578960/1‑71 (MQ=255) cccTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAAcc < 1:1786136/71‑1 (MQ=255) ccTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGctc > 1:970697/1‑47 (MQ=255) gtgtTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTAt < 1:2212391/71‑1 (MQ=255) gtgtTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGAATGGGGCAGGGAATAACCAgg > 1:555023/1‑67 (MQ=255) tgtTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATggg < 1:2923903/50‑1 (MQ=255) tgtTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTAtt < 1:4466830/71‑1 (MQ=255) gtTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAgg > 1:2792324/1‑54 (MQ=255) ttttCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGa < 1:3717291/55‑1 (MQ=255) ttttCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTtc > 1:4391031/1‑71 (MQ=255) tatCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTtct > 1:1148848/3‑71 (MQ=255) tCGTATGCAGTGTCTATGCGACAGACTCTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTtctc < 1:4152542/70‑1 (MQ=255) tCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTtctc < 1:2006474/70‑1 (MQ=255) gTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAt > 1:2946889/1‑71 (MQ=255) gTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCAt < 1:124396/71‑1 (MQ=255) tGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGc < 1:1310814/70‑1 (MQ=255) cAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGcaca < 1:908096/71‑1 (MQ=255) cAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGcac < 1:3951781/70‑1 (MQ=255) aGTGTCTATGCGACagacactgcatacgaaaacaccagagggtgctgttactt > 1:90122‑M2/1‑14 (MQ=255) aGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAAt < 1:4592476/46‑1 (MQ=255) aGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAg > 1:4108079/1‑52 (MQ=255) gtgtCTATGCGACagacactgcatacgaaaacaccagagggtgctgttacttatttaaggacggatcaagc < 1:2084927‑M2/71‑59 (MQ=255) gtgtCTATGCGACagacactgcatacgaaaacaccagagggtgctgtta > 1:2869684‑M2/1‑13 (MQ=255) gtgtCTATGCGACagacactgcatacgaaaacaccagagggtgctgtta > 1:1919802‑M2/1‑13 (MQ=255) tgtCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGc < 1:2495962/71‑1 (MQ=255) tCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGcc < 1:2140978/70‑1 (MQ=255) tATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAAt > 1:3762601/1‑71 (MQ=255) tGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGcac < 1:884478/61‑1 (MQ=255) tGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAAtt < 1:2645356/70‑1 (MQ=255) cGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTAttt > 1:3561401/1‑49 (MQ=255) cGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTAt > 1:1266940/1‑70 (MQ=255) acagacaCTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTAt < 1:2895116/45‑1 (MQ=255) | CCGCTTGATCCGTCCTTAAATAAGTAACAGCACCCTCTGGTGTTTTCGTATGCAGTGTCTATGCGACAGACACTGCGCTCTTAGCATGGGGCAGGGAATAACCAGGCTATTTCTCCATGCACAGGCCAATTAT > AP009048/1592253‑1592385 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |