| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2173564 | NA (NA) | 97 (1.980) | 53/100 | NT | 100% | pseudogene (307/2041 nt) pseudogene (307/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | AP009048 | 3920276 = | 0 (0.000) | coding (91/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 235 total aligned reads displayed.
GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA > AP009048/3920206‑3920344 | gTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa < 1:1025686/71‑1 (MQ=255) ctcagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca > 1:613879‑M2/69‑69 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccttattacgtgggtaggatcacaca > 1:2810806‑M2/67‑71 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:1647078‑M2/67‑70 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacaca > 1:2175264‑M2/67‑71 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacaca > 1:4426957‑M2/67‑71 (MQ=255) cagtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcaca > 1:2914580‑M2/67‑69 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacactt > 1:335050‑M2/66‑69 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac < 1:3712754‑M2/4‑1 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac < 1:2370454‑M2/4‑1 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACAt > 1:4110192‑M2/66‑71 (MQ=255) tccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTtcg < 1:1038408‑M2/8‑2 (MQ=255) acacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat < 1:1936145‑M2/71‑5 (MQ=255) cacTTTCTGCCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat < 1:3114042‑M2/70‑5 (MQ=255) cacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:2423586‑M2/71‑6 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:488889‑M2/1‑1 (MQ=255) cggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:3508948‑M2/9‑1 (MQ=255) ggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt > 1:3788191‑M2/61‑69 (MQ=255) ggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa < 1:2041814‑M2/11‑1 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGaa > 1:963340/1‑61 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:4006472‑M2/1‑1 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatca < 1:516387‑M2/1‑1 (MQ=255) gaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtcggtaggatca < 1:1700895‑M2/1‑1 (MQ=255) tCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:326637‑M2/71‑11 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac > 1:2831660‑M2/54‑57 (MQ=255) tttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCAt > 1:3677463‑M2/54‑71 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATc > 1:3893615‑M2/52‑70 (MQ=255) tgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCg > 1:2058482‑M2/52‑71 (MQ=255) cTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc > 1:3845818‑M2/1‑55 (MQ=255) tCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:1084655‑M2/69‑17 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:1002278‑M2/1‑52 (MQ=255) aaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt > 1:504926‑M2/49‑69 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcac > 1:4286341‑M2/47‑48 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAgg < 1:4017353‑M2/25‑1 (MQ=255) caagaacatcgcttaggcctgtgtccatattacgtgggtaggatca < 1:1744015‑M2/1‑1 (MQ=255) aagaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACTTc > 1:2994445‑M2/45‑51 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggaca < 1:1225584‑M2/71‑26 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:1311183‑M2/43‑53 (MQ=255) agaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacac < 1:211221‑M2/71‑27 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcACACttcgg < 1:1541852‑M2/9‑3 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCtt < 1:1577283‑M2/9‑1 (MQ=255) aTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAacac > 1:3059139/1‑43 (MQ=255) aTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgc > 1:1152008‑M2/1‑43 (MQ=255) ctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatga < 1:583716‑M2/33‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatca < 1:4309821‑M2/1‑1 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatca < 1:2940206‑M2/1‑1 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt > 1:2705148‑M2/36‑56 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggcta > 1:2530903‑M2/1‑38 (MQ=255) tAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggct > 1:4352911‑M2/1‑38 (MQ=255) aCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaa > 1:3044669‑M2/1‑36 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt > 1:3312237‑M2/1‑35 (MQ=255) ccATCGTTCTGGATAGCAGAGAAGTGTACGAACACtg > 1:3169021‑M2/1‑35 (MQ=255) aggcctgtgtccatattacgtgggtaggatcacac > 1:2354019‑M2/32‑35 (MQ=255) ggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaa < 1:3034041‑M2/40‑1 (MQ=255) cATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:3412428‑M2/1‑34 (MQ=255) gcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAg > 1:1813416‑M2/30‑53 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtga > 1:1461204‑M2/1‑33 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagt < 1:298870‑M2/69‑37 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgag < 1:1785018‑M2/71‑40 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg > 1:3495748‑M2/1‑32 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccag > 1:1843766‑M2/1‑32 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg < 1:4498476‑M2/29‑1 (MQ=255) ctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCt > 1:1635927‑M2/28‑71 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:2795545‑M2/1‑30 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaa > 1:3128671‑M2/1‑29 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:2275028‑M2/1‑29 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:3218315‑M2/23‑70 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:820274‑M2/23‑70 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt < 1:1925597‑M2/48‑1 (MQ=255) tGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggc > 1:570995‑M2/1‑26 (MQ=255) ccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:4570220‑M2/22‑69 (MQ=255) gatatttcgtgtgtaggatcACACTTATTTAGAGCCATCGTCAGGa < 1:3935743‑M2/26‑1 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:729757‑M2/1‑24 (MQ=255) catattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAg > 1:1124948‑M2/21‑71 (MQ=255) atattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaagc > 1:4024209‑M2/20‑61 (MQ=255) atattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGc > 1:705835‑M2/20‑71 (MQ=255) aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct < 1:313148‑M2/70‑48 (MQ=255) aTAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:1615347‑M2/1‑23 (MQ=255) aGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagta > 1:4510906‑M2/1‑21 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt > 1:2398294‑M2/17‑62 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:1992193‑M2/17‑71 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGAGATGAAGCCGAAGCCTTTGTCAGCGtt > 1:953739‑M2/17‑71 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCttt > 1:4223527‑M2/16‑61 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtc > 1:673586‑M2/1‑19 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaa > 1:4152300‑M2/1‑19 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg < 1:128307‑M2/56‑1 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcag > 1:4478048‑M2/1‑17 (MQ=255) gaAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcag < 1:3754613‑M2/65‑51 (MQ=255) gggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg > 1:4389043‑M2/11‑48 (MQ=255) gggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg > 1:776628‑M2/11‑48 (MQ=255) gtgtACGAACACtgatcttacccagcaatagtggacacgcggctaa < 1:4070078‑M2/46‑35 (MQ=255) tgtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtga > 1:4587387‑M2/1‑11 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGaa > 1:3565404‑M2/8‑65 (MQ=255) taggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:762696‑M2/64‑1 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgac < 1:1449198‑M2/71‑62 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaagtg < 1:2637903‑M2/46‑38 (MQ=255) tACGAACACtgatcttacccagcaatagtggacacgcggctaag > 1:2884924‑M2/1‑9 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGtgat < 1:1328699‑M2/31‑1 (MQ=255) ggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:1507318‑M2/6‑36 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaag < 1:3638042‑M2/42‑36 (MQ=255) | GTGAAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGA > AP009048/3920206‑3920344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |