| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3628496 = | 53 (1.060) | 3 (0.060) | 3/96 | NT | 5.1% | coding (429/621 nt) | rhtC | threonine efflux system |
| ? | AP009048 | 3628521 = | 62 (1.320) | coding (404/621 nt) | rhtC | threonine efflux system | |||||
GACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGAAACTGCGCCC > AP009048/3628451‑3628591 | gACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAaca > 1:4495782/1‑71 (MQ=255) aCAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAacac > 1:1311379/1‑71 (MQ=255) caatctcgctaatccgaaagcgattatctactttggctcggtGTTATCACCGACAAACAATGAGAACACCg > 1:623372‑M1/43‑71 (MQ=255) aaTGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCg < 1:3502772/71‑1 (MQ=255) tGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACAcc > 1:447420/1‑68 (MQ=255) tGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAg > 1:595515/1‑71 (MQ=255) cAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAg > 1:1303113/1‑68 (MQ=255) aaaaaTGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAg < 1:3098446/70‑1 (MQ=255) aaaaaTGCCCCAGCGCGCGGTAGAGCCAACGTTATCACCGACAAACAATGAGAACACAGAGCCaaa > 1:1645115/1‑66 (MQ=255) aaaaTGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGa > 1:2324623/1‑70 (MQ=255) aaaTGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGAt > 1:3901281/1‑70 (MQ=255) aaTGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATaa < 1:4212950/71‑1 (MQ=255) aaTGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATa < 1:3262836/70‑1 (MQ=255) tGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCaaa > 1:4590505/1‑61 (MQ=255) gCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCg > 1:4092392/1‑71 (MQ=255) ccccAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCg < 1:768548/70‑1 (MQ=255) cccAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATaa < 1:3020380/66‑1 (MQ=255) cAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCttt < 1:3183710/71‑1 (MQ=255) cAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCttt > 1:3203746/1‑71 (MQ=255) aGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCa < 1:899460/53‑1 (MQ=255) aGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTc < 1:647499/71‑1 (MQ=255) aGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTc > 1:929852/1‑71 (MQ=255) gcgcgcGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCg < 1:4373807/71‑1 (MQ=255) gcgcgcGGTAGTGCCAACGTTATCACCGACAAACAATCAGAACACCGa > 1:4529586/1‑48 (MQ=255) gcgGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGAtt < 1:3686992/71‑1 (MQ=255) gcgGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGAtt < 1:2090216/71‑1 (MQ=255) cgGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCa < 1:3027475/47‑1 (MQ=255) cgGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCa < 1:2558903/47‑1 (MQ=255) cgGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCa < 1:4171692/47‑1 (MQ=255) cgGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTa < 1:1104020/71‑1 (MQ=255) ttGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGc > 1:3519011/2‑68 (MQ=255) gTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTa < 1:3755854/47‑1 (MQ=255) gTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCga < 1:3712053/70‑1 (MQ=255) gCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGAt > 1:4512582/1‑71 (MQ=255) ccAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGAt < 1:1778288/70‑1 (MQ=255) cggtgttctcattgtttgtcggtgataacACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTg > 1:623372‑M2/30‑71 (MQ=255) cAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTg > 1:2080154/1‑71 (MQ=255) cAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTg > 1:1932122/1‑71 (MQ=255) cAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTg > 1:1429442/1‑71 (MQ=255) aaCGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTgg > 1:4033677/1‑71 (MQ=255) aaCGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTgg > 1:4299496/1‑71 (MQ=255) aCGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGt > 1:2680249/1‑71 (MQ=255) aCGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGt > 1:3280269/1‑71 (MQ=255) gttctcattgtttgtcggtgataacACCGAGCCAAAGTAGATAATCGCtt < 1:1689553‑M2/25‑1 (MQ=255) GTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGAt > 1:1973875‑M1/1‑56 (MQ=255) TTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATc < 1:3095977‑M1/45‑1 (MQ=255) TATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAg < 1:3056004‑M1/70‑1 (MQ=255) TATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAg < 1:1128219‑M1/70‑1 (MQ=255) TATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAg < 1:4502358‑M1/70‑1 (MQ=255) aTCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATaa > 1:1546298/1‑41 (MQ=255) aTCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGt > 1:237847/1‑70 (MQ=255) aTCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGt > 1:3880248/1‑70 (MQ=255) tCACCGACAAACAATGAGAACACCGAGCCAAAGTAg > 1:425830/1‑36 (MQ=255) tCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTa < 1:1654761/70‑1 (MQ=255) tCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTa < 1:2196258/70‑1 (MQ=255) aCCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCg < 1:931936/47‑1 (MQ=255) ccGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAAcc > 1:4118333/1‑71 (MQ=255) cGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCg < 1:1798235/45‑1 (MQ=255) cGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCga < 1:2745129/54‑1 (MQ=255) cGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCt < 1:1991503/71‑1 (MQ=255) cGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCt < 1:2299894/71‑1 (MQ=255) gtttgtcggtgataacACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCa > 1:2882810‑M2/17‑62 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATaa > 1:2022815/1‑35 (MQ=255) gACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCtt < 1:1535845/71‑1 (MQ=255) acaaacaaTGAGAACACCGAGCCAAAGTAGATAATCGCtt > 1:930894/1‑40 (MQ=255) acaaacaaTGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGAt > 1:2575773/1‑46 (MQ=255) acaaacaaTGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCttt > 1:1133916/1‑71 (MQ=255) acaaacaaTGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCttt < 1:542164/71‑1 (MQ=255) acaaacaaTGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCttt > 1:1520959/1‑71 (MQ=255) caaacaaTGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGTATTAGCGAGATTGGTCAGTAAACCTTTc < 1:3654290/71‑1 (MQ=255) caaacaaTGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCttt < 1:2273486/70‑1 (MQ=255) aaacaaTGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCttt < 1:4209295/69‑1 (MQ=255) acaaTGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGAtt < 1:1365756/43‑1 (MQ=255) caaTGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGa < 1:3982571/71‑1 (MQ=255) aaTGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGa > 1:2994038/1‑70 (MQ=255) aaTGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGa > 1:2988637/1‑70 (MQ=255) gagaACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTc < 1:2462425/63‑1 (MQ=255) gagaACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCa < 1:3737305/64‑1 (MQ=255) agaACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGAAACt < 1:1866793/70‑1 (MQ=255) gaACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGAAACTgc < 1:3373011/71‑1 (MQ=255) gaACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGAAACTgc < 1:2225967/71‑1 (MQ=255) acACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGAAACTgcgc > 1:2204688‑M2/3‑71 (MQ=255) cACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCa > 1:1095447‑M2/2‑59 (MQ=255) cACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGAAACTGCGcc > 1:1616098‑M2/2‑71 (MQ=255) acCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGAAACTGCGccc < 1:1277934/71‑1 (MQ=255) acCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGAAACTGCGcc > 1:4156305/1‑70 (MQ=255) | GACAATGATCAGCGCAAAAATGCCCCAGCGCGCGGTAGTGCCAACGTTATCACCGACAAACAATGAGAACACCGAGCCAAAGTAGATAATCGCTTTCGGATTAGCGAGATTGGTCAGTAAACCTTTCAGGAAACTGCGCCC > AP009048/3628451‑3628591 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |