| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4492052 | 60 (1.200) | 3 (0.070) | 3/92 | NT | 5.1% | coding (55/1083 nt) | yjgQ | conserved inner membrane protein |
| ? | AP009048 | = 4492073 | 57 (1.260) | coding (76/1083 nt) | yjgQ | conserved inner membrane protein | |||||
CCTTTTGGCGTACTTGACCGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAGCCGGGCAGGGGAGTTACGACG > AP009048/4492004‑4492142 | ccTTTTGGCGTACTTGACCGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCt < 1:3494903‑M2/71‑2 (MQ=255)ccTTTTGGCGTACTTGACCGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCt > 1:1390400‑M2/1‑70 (MQ=255)ccTTTTGGCGTACTTGACCGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCt > 1:2793816‑M2/1‑70 (MQ=255) ttGGCGTACTTGACCGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCtgg > 1:4084656‑M2/1‑66 (MQ=255) cGTACTTGACCGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCAAGCTGGTGTCGc > 1:3183410/1‑71 (MQ=255) tACTTGACCGCTATATCGGTAAAACTATTTTCCCCACCATCATGATGACACTGTTCATGCTGGTGTCGCt < 1:2033853/70‑1 (MQ=255) aCTTGACCGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCt < 1:2547546/69‑1 (MQ=255) cTTGACCGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTc > 1:3321128/1‑71 (MQ=255) cTTGACCGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTc > 1:2943475/1‑71 (MQ=255) tGACCGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCgg > 1:3693312/1‑71 (MQ=255) gACCGCTATATCGGTAAACCTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCg > 1:4488660/1‑63 (MQ=255) gACCGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCgg < 1:4089284/70‑1 (MQ=255) gACCGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCg < 1:4096342/69‑1 (MQ=255) aCCGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCggg > 1:3880050/1‑70 (MQ=255) aCCGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGc < 1:3190257/71‑1 (MQ=255) ccGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCa < 1:4403793/71‑1 (MQ=255) cTATATCGGTTAAACTATTTTCACCACCATCATGATGACACTGTTCATGc < 1:2351603/50‑1 (MQ=255) cTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTa < 1:649012/71‑1 (MQ=255) cTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTa < 1:753506/71‑1 (MQ=255) tatCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTc < 1:3310557/54‑1 (MQ=255) tCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGt > 1:1227559/1‑57 (MQ=255) tCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCACTGt > 1:2242718/1‑57 (MQ=255) gTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCg > 1:3593094/1‑56 (MQ=255) aaaaCTATTTTCACCACCATCATGATGACACTGTTCATGCTGgtgt > 1:1364229/1‑46 (MQ=255) aaaCTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGt < 1:920836/66‑1 (MQ=255) aaCTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCg < 1:859569/71‑1 (MQ=255) aCTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGa < 1:233404/71‑1 (MQ=255) aCTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGa > 1:1244375/1‑71 (MQ=255) aCTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGa < 1:32747/71‑1 (MQ=255) aCTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGa > 1:3397069/1‑71 (MQ=255) aCTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGa > 1:283628/1‑71 (MQ=255) aCTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGa < 1:677854/71‑1 (MQ=255) aCTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGa > 1:508642/1‑71 (MQ=255) aCTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGa > 1:2402241/1‑71 (MQ=255) cTATTTTCACCACCATCGTGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGAt > 1:2217646/1‑71 (MQ=255) cTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGAt < 1:658384/71‑1 (MQ=255) cTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGAt < 1:3978214/71‑1 (MQ=255) cTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGAt < 1:2091387/71‑1 (MQ=255) tATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGAt < 1:2096683/70‑1 (MQ=255) aTTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGt < 1:18237/46‑1 (MQ=255) aTTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGAt > 1:1531375/1‑69 (MQ=255) ttttCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAg < 1:2257893/71‑1 (MQ=255) accaccATCATGATGACACTGTTCATGCtggtggtgaaaatagttttaccgatatagcggtcaagtacgc < 1:879705‑M2/70‑43 (MQ=255) accaccATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCg < 1:956075/61‑1 (MQ=255) accaccATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGAt > 1:2560373/1‑63 (MQ=255) accaccATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGa > 1:1466484/1‑70 (MQ=255) caccaTCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCg < 1:4303006/59‑1 (MQ=255) caccaTCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCg < 1:3832151/59‑1 (MQ=255) caccaTCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGaaa < 1:4149840/70‑1 (MQ=255) ccaTCATGATGACACTGTTCATGCtggtggtgaaaatagttttaccgatatag > 1:563879‑M2/1‑24 (MQ=255) ccaTCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGaaaaaa < 1:4317388/71‑1 (MQ=255) catcatGATGACACTGTTCATGCTGGTGTCGCTGTCggg < 1:1988811/39‑1 (MQ=255) catcatGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAg < 1:1982884/71‑1 (MQ=255) catcatGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAg < 1:2477876/71‑1 (MQ=255) atcatGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAGc > 1:1341480/1‑71 (MQ=255) tcatGATGACACTGTTCATGCTGGTGTCGCTGTCg < 1:1456717/35‑1 (MQ=255) catGATGACACTGTTCATGAtggtggtgaaaatagttttaccgatatagcggtcaagtacgccaaaaggtt < 1:2402297‑M2/71‑52 (MQ=255) atgatgACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGttt > 1:1701331/1‑48 (MQ=255) atgatgACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGAt > 1:2081946/1‑54 (MQ=255) atgatgACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGAt > 1:1269694/1‑54 (MQ=255) atgatgACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAGCCgg < 1:3251925/71‑1 (MQ=255) gatgaCACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTg < 1:1695817/47‑1 (MQ=255) tgaCACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAGCCGGGCAg < 1:397050/71‑1 (MQ=255) tgaCACTGTTCATGCTGGTGTAGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAGCCGGGCAg < 1:2440336/71‑1 (MQ=255) gaCACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGaaaaaa > 1:2608265/1‑61 (MQ=255) gaCACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAGCCGGGCa > 1:4216486/1‑69 (MQ=255) cacTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAGCCGGGCAgggg < 1:2814898/71‑1 (MQ=255) cacTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAGCCGGGCAggg > 1:3152130/1‑70 (MQ=255) cacTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAGCCGGGCAggg > 1:3299608/1‑70 (MQ=255) acTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGc < 1:4077304/50‑1 (MQ=255) ttCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAGCCGGGCAgg < 1:1113336/64‑1 (MQ=255) cATGCTGGTTTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAGCCGGGCAGGGGAGTTac < 1:840167/70‑1 (MQ=255) cATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAGCCGGGCAgggg > 1:271406/1‑64 (MQ=255) aTGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAGCCGGGCAGGGGAGTTacg < 1:642585/70‑1 (MQ=255) gCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAGCCGGGCAGGGGAGTTacgacg > 1:2674914/1‑71 (MQ=255) | CCTTTTGGCGTACTTGACCGCTATATCGGTAAAACTATTTTCACCACCATCATGATGACACTGTTCATGCTGGTGTCGCTGTCGGGCATTATCAAGTTTGTCGATCAGCTGAAAAAAGCCGGGCAGGGGAGTTACGACG > AP009048/4492004‑4492142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |