| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | AP009048 | 2,972,729 | T→C | 13.1% | S648G (AGC→GGC) | aas ← | fused 2‑acylglycerophospho‑ethanolamine acyl transferase and acyl‑acyl carrier protein synthetase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | AP009048 | 2,972,729 | 0 | T | C | 13.1% | 155.4 / 14.2 | 61 | S648G (AGC→GGC) | aas | fused 2‑acylglycerophospho‑ethanolamine acyl transferase and acyl‑acyl carrier protein synthetase |
| Reads supporting (aligned to +/- strand): ref base T (30/23); new base C (5/3); total (35/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTCCACCATTTCCAGCGA > AP009048/2972660‑2972798 | gCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGct < 1:1064996/70‑1 (MQ=255) aaCTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGccct > 1:3676215/1‑70 (MQ=255) aCTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCtt > 1:1858814/1‑70 (MQ=255) aCTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCtt > 1:776767/1‑70 (MQ=255) aCTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCtt > 1:782154/1‑70 (MQ=255) tATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGccct > 1:3406812/1‑66 (MQ=255) tATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGccct > 1:1663337/1‑66 (MQ=255) aTCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAAt < 1:401480/69‑1 (MQ=255) tCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCg < 1:2097213/70‑1 (MQ=255) tCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCg > 1:2945268/1‑70 (MQ=255) tCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGc < 1:2876330/71‑1 (MQ=255) tCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCg < 1:4030766/70‑1 (MQ=255) cgcgTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGt < 1:3652117/71‑1 (MQ=255) gcgTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTg < 1:4598974/71‑1 (MQ=255) gcgTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTg > 1:1690467/1‑71 (MQ=255) cAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGc > 1:1754790/1‑63 (MQ=255) cAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCAt > 1:100891/1‑71 (MQ=255) aGTTCGTTATCTGTGTTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCAt < 1:3401501/70‑1 (MQ=255) gTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATgg < 1:676157/71‑1 (MQ=255) ttCGTTATCTGTGGTGAAAAGCACGAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGc < 1:44254/60‑1 (MQ=255) ttCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCa > 1:3659348/1‑67 (MQ=255) ttCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGa > 1:2815956/1‑71 (MQ=255) tCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTg > 1:974871/1‑63 (MQ=255) cGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACt > 1:236035/1‑71 (MQ=255) cGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACt > 1:2471598/1‑71 (MQ=255) cGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACt > 1:3774635/1‑71 (MQ=255) ttATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGctct < 1:4391534/49‑1 (MQ=255) aTCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTg > 1:350653/1‑58 (MQ=255) aTCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTAt > 1:3064893/1‑71 (MQ=255) aTCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTAt > 1:3215610/1‑71 (MQ=255) tCTGTGGTGAAGCGCACCAGTGCCTCGCCTTTACTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATc > 1:2535308/1‑71 (MQ=255) tggtgAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGAATGGACTTTATCt < 1:4443923/68‑1 (MQ=255) gtgAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTGGCGa < 1:1461557/71‑1 (MQ=255) tgAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGaa < 1:934594/71‑1 (MQ=255) gAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATg < 1:981673/54‑1 (MQ=255) gAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGaaa > 1:1774080/1‑71 (MQ=255) aaaaGCACCAGTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTAt > 1:2578001/1‑61 (MQ=255) aGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCt < 1:1956455/60‑1 (MQ=255) cACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCaa < 1:3007208/71‑1 (MQ=255) cAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGa < 1:2837844/47‑1 (MQ=255) cAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTg > 1:3492050/1‑71 (MQ=255) aGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGa > 1:4548998/1‑59 (MQ=255) gTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAaca > 1:2925521/1‑62 (MQ=255) gTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCAGGGACTTTATCTgg > 1:2194087/1‑55 (MQ=255) gTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTGGCGaaa > 1:3345922/1‑60 (MQ=255) gTGCCTCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACTTTATCTGGCGaaa > 1:1562712/1‑60 (MQ=255) tGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCa < 1:3476092/71‑1 (MQ=255) ccTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAg < 1:2602484/70‑1 (MQ=255) ccTCGCCCTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTa > 1:2452517/1‑47 (MQ=255) tCGCCTTTGCTGGCATCGCCCTTAATCGCAGTGGCATGGACtt < 1:1214671/43‑1 (MQ=255) cGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGTCAgttgt > 1:796943/1‑71 (MQ=255) cGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAgt < 1:3308411/68‑1 (MQ=255) gCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAgttgtt > 1:1675078/1‑71 (MQ=255) gCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAgttgtt < 1:3223346/71‑1 (MQ=255) gCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAgttgtt > 1:1341735/1‑71 (MQ=255) gCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAgttgtt < 1:1042812/71‑1 (MQ=255) ccTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTc < 1:1171417/71‑1 (MQ=255) cTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTc > 1:626503/1‑70 (MQ=255) tGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTTTTccac < 1:10428/70‑1 (MQ=255) tGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTccac > 1:2524084/1‑70 (MQ=255) gCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTccac > 1:2871461/1‑65 (MQ=255) cGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTCCACCATTTCCAg < 1:4330234/70‑1 (MQ=255) gCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGaaa > 1:1094450/1‑38 (MQ=255) gCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGaaa > 1:1019214/1‑38 (MQ=255) gCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTCCACCATTTCCAGc > 1:3083458/1‑70 (MQ=255) gCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTCCACCATTTCCAGCg < 1:3736554/71‑1 (MQ=255) ctctTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGc < 1:1253193/47‑1 (MQ=255) ctctTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTCCACCAtt < 1:3129551/63‑1 (MQ=255) ctctTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTCCACCATTTCCAGCGa > 1:3119504/1‑71 (MQ=255) | GCAACTTATCGCGCGTCAGTTCGTTATCTGTGGTGAAAAGCACCAGTGCCTCGCCTTTGCTGGCATCGCTCTTAATCGCAGTGGCATGGACTTTATCTGGCGAAACACCAAGTGCCAGTTGTTCCACCATTTCCAGCGA > AP009048/2972660‑2972798 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |