| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 401088 = | 97 (1.580) | 5 (0.090) | 3/88 | NT | 7.1% | coding (448/1212 nt) | dacA | D‑alanyl‑D‑alanine carboxypeptidase |
| ? | Exported | 401124 = | 46 (0.850) | coding (412/1212 nt) | dacA | D‑alanyl‑D‑alanine carboxypeptidase | |||||
Only 100 of 117 total aligned reads displayed.
TTTCAGGCCCAGTGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACCGCGGATCAGCTGAGAAACCGGA > Exported/401020‑401158 | tttCAGGCCCAGTGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAAt > 1:1332884/1‑71 (MQ=255) cgctgatgttcctcaaaccgggcatgcaggttccggtttctcagctgatccgcggtattaacctgcAATc > 1:2497492‑M1/67‑70 (MQ=255) cgctgatgttcctcaaaccgggcatgcaggttccggtttctcagctgatccgcggtattaacctgcAATc > 1:714006‑M1/67‑70 (MQ=255) cgctgatgttcctcaaaccgggcatgcaggttccggtttctcagctgatccgcggtattaacctgcAATCg < 1:617114‑M1/5‑1 (MQ=255) cAGGCCCAGTGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCg < 1:1079625/70‑1 (MQ=255) gCCCAGTGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCa > 1:2271389/1‑71 (MQ=255) ccAGTGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATg > 1:444251/1‑71 (MQ=255) ccAGTGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATg > 1:91445/1‑71 (MQ=255) ccAGTGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATg > 1:682470/1‑71 (MQ=255) cAGTGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATgg < 1:155811/71‑1 (MQ=255) gTGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAAt < 1:177935/60‑1 (MQ=255) tGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAAt < 1:1601241/59‑1 (MQ=255) tGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGa < 1:2153327/71‑1 (MQ=255) tGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGa < 1:3674356/71‑1 (MQ=255) tGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGa < 1:171284/71‑1 (MQ=255) tGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGa < 1:2754697/71‑1 (MQ=255) tGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGa < 1:2939752/71‑1 (MQ=255) gCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATg > 1:1939740/1‑66 (MQ=255) gCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGa < 1:899559/70‑1 (MQ=255) tAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGacac > 1:1795122/1‑69 (MQ=255) aaCGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAAt > 1:113207/1‑53 (MQ=255) aaCGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAAt > 1:3106463/1‑53 (MQ=255) aaCGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAg > 1:170299/1‑71 (MQ=255) aCGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAg > 1:3040608/1‑70 (MQ=255) cGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCa < 1:1504175/71‑1 (MQ=255) cGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCa < 1:3124391/71‑1 (MQ=255) cGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCa < 1:3066930/71‑1 (MQ=255) gTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCAt < 1:804676/71‑1 (MQ=255) aGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGaca < 1:2791135/62‑1 (MQ=255) aGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGaca < 1:3470425/62‑1 (MQ=255) gTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCa > 1:2989101/1‑50 (MQ=255) ttCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAcc > 1:1366807/1‑71 (MQ=255) ttCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAc < 1:1945963/70‑1 (MQ=255) tcatcaAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAcc < 1:1113145/70‑1 (MQ=255) catcaAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCa < 1:1191697/61‑1 (MQ=255) catcaAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAccc < 1:2592584/70‑1 (MQ=255) catcaAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAccc > 1:3145241/1‑70 (MQ=255) atcaAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAccct < 1:759206/70‑2 (MQ=255) caAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTa > 1:1524885/1‑64 (MQ=255) aaGCCAACAAAAGCGTCCTGGCTACCAGCGGCaaaa > 1:1339171/1‑36 (MQ=255) aaGCCAACAAAAGCGTCCTGGCTACCAGCGGCaaaa > 1:3277180/1‑36 (MQ=255) aaGCCAACAAAAGCGTCCTGGCTACCAGCGGCaaaa > 1:1359852/1‑36 (MQ=255) aaGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTg > 1:1233039/1‑71 (MQ=255) aaGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTg > 1:1651398/1‑71 (MQ=255) aaGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTg > 1:2380468/1‑71 (MQ=255) aaGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTg > 1:3564008/1‑71 (MQ=255) aaGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTg > 1:1224971/1‑71 (MQ=255) gCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCg < 1:1369237/65‑1 (MQ=255) gCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCg < 1:1029940/65‑1 (MQ=255) gCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCg < 1:862210/65‑1 (MQ=255) gCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTg > 1:542566/1‑69 (MQ=255) caacaaAAGCGTCCTGGCTACCAGCGGCAAAATCGGcc > 1:2790706/1‑38 (MQ=255) caacaaAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAc > 1:1760083/1‑60 (MQ=255) caacaaAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAc > 1:1170886/1‑60 (MQ=255) caacaaAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAc > 1:313110/1‑60 (MQ=255) ttctcagctgatccgcggtattaacctgcAATCGGCCATGGCGACACAAGCATCGTTAccc > 1:1733499‑M1/30‑61 (MQ=255) ttctcagctgatccgcggtattaacctgcAATCGGCCATGGCGACACAAGCATCGTTAccc > 1:387410‑M1/30‑61 (MQ=255) aacaaAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGt > 1:2146329/1‑71 (MQ=255) aacaaAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGt > 1:567318/1‑71 (MQ=255) acaaAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGtt < 1:831214/71‑1 (MQ=255) caaAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGacac < 1:3409713/45‑1 (MQ=255) caaAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGacac < 1:2971108/45‑1 (MQ=255) caaAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGtt > 1:756586/1‑70 (MQ=255) caaAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGtt > 1:2545220/1‑70 (MQ=255) caaAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGtt > 1:1198192/1‑70 (MQ=255) caaAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGtt > 1:1304704/1‑70 (MQ=255) aaaaGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTaa > 1:3001762/1‑71 (MQ=255) aaaaGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTaa < 1:3764615/71‑1 (MQ=255) cGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACcg < 1:2396881/71‑1 (MQ=255) tCCTGTCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAccc < 1:1819337/51‑1 (MQ=255) tCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACcgcg > 1:3564025/1‑71 (MQ=255) atccgcggtattaacctgcAATCGGCCATGGCGACACAAGCATCGTTACCCGa > 1:949470‑M1/20‑53 (MQ=255) atccgcggtattaacctgcAATCGGCAATGGCGACACAAGCATCGTTACCCGa > 1:2397134‑M1/20‑53 (MQ=255) ccgcggtattaacctgcAATCGGCCATGGCGACACAAGCATCGTTACCCGAtt < 1:2394156‑M1/36‑1 (MQ=255) cTGGCTACCAGCTGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACCGCGGa < 1:1201176/71‑1 (MQ=255) cTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAccc < 1:3090154/49‑1 (MQ=255) cTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAccc < 1:1572155/49‑1 (MQ=255) cTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAccc < 1:350336/49‑1 (MQ=255) cTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGa > 1:3533905/1‑51 (MQ=255) cTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGa > 1:3705544/1‑51 (MQ=255) cTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGa > 1:2979686/1‑51 (MQ=255) cTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAAt > 1:491229/1‑63 (MQ=255) cTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACCGCgg < 1:395110/70‑1 (MQ=255) cTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACCGCGGa < 1:1292912/71‑1 (MQ=255) tGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAccc < 1:3052684/48‑1 (MQ=255) tGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAccc < 1:896155/48‑1 (MQ=255) tGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAccc < 1:361903/48‑1 (MQ=255) ggCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTAccc < 1:1494037/47‑1 (MQ=255) ggCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCg > 1:3231609/1‑48 (MQ=255) ggCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGa > 1:1823559/1‑49 (MQ=255) tACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACCGCGGATCAGc > 1:145756/1‑71 (MQ=255) aGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACCGCGGATCAGCTgag < 1:3436771/71‑1 (MQ=255) ggggCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACCGCGGATCAGCTgag > 1:2268366/3‑70 (MQ=255) gCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACCGCGGATCAGCTgag > 1:1723052/1‑70 (MQ=255) gCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACCGCGGATCAGCTgag > 1:837811/1‑70 (MQ=255) gCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACCGCGGATCAGCTgag > 1:2518797/1‑70 (MQ=255) gCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACCGCGGATCAGCTgag > 1:2202382/1‑70 (MQ=255) cGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACCGCGGATCAGCTGAGaa < 1:1776885/71‑1 (MQ=255) ggCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACCGCGGATCAGCTGAGaa < 1:1647932/70‑1 (MQ=255) AATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACCGCGGATCAGCTGAGAAACCGGa > 1:1960975‑M1/1‑71 (MQ=255) | TTTCAGGCCCAGTGCGTTAACGTAGCTGTTCATCAAGCCAACAAAAGCGTCCTGGCTACCAGCGGCAAAATCGGCCATGGCGACACAAGCATCGTTACCCGATTGCAGGTTAATACCGCGGATCAGCTGAGAAACCGGA > Exported/401020‑401158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |