| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 937,123 | C→T | 9.0% | intergenic (+29/+378) | fdnI → / ← yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/predicted DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 937,123 | 0 | C | T | 9.0% | 240.1 / 11.6 | 78 | intergenic (+29/+378) | fdnI/yddM | formate dehydrogenase‑N, cytochrome B556 (gamma) subunit, nitrate‑inducible/predicted DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (29/42); new base T (2/5); total (31/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-01 | |||||||||||
GAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTG > Exported/937053‑937188 | gagaAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGgc > 1:36689/1‑71 (MQ=255) aaGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCt > 1:3467024/1‑71 (MQ=255) aaGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCt > 1:2765874/1‑71 (MQ=255) aGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTg < 1:3480832/71‑1 (MQ=255) aGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTg < 1:1212278/71‑1 (MQ=255) cAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTaa < 1:768163/71‑1 (MQ=255) cAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTaa < 1:2290636/71‑1 (MQ=255) aGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTTAACTTTAAGCTGAAAATGGCGCTGTaaa < 1:3170208/71‑1 (MQ=255) aaGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAg < 1:2168813/71‑1 (MQ=255) aaGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAg < 1:240963/71‑1 (MQ=255) aGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAgg > 1:117664/1‑71 (MQ=255) aGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAgg > 1:2358545/1‑71 (MQ=255) aaaaaGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTaaaa < 1:1554080/64‑1 (MQ=255) aaaaaGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTaaaa < 1:1623128/64‑1 (MQ=255) aaaaGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGTGCTGTAAAAGGCGCCAt > 1:772994/1‑71 (MQ=255) aaaaGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGt < 1:2239618/59‑1 (MQ=255) aaaaGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGt < 1:2253590/59‑1 (MQ=255) aaaaGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCAt > 1:3563515/1‑71 (MQ=255) aaGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTaa > 1:1358684/1‑59 (MQ=255) agagagTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCAtttt < 1:107989/71‑1 (MQ=255) gagTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCat < 1:770093/71‑1 (MQ=255) agTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTaaaa > 1:1982240/1‑56 (MQ=255) agTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCata < 1:3853701/71‑1 (MQ=255) gaagaaGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGTGCTGTaa < 1:762897/51‑1 (MQ=255) gaagaaGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGTGCTGTaa < 1:954364/51‑1 (MQ=255) gaagaaGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGTGCTGTaa < 1:2750063/51‑1 (MQ=255) gaagaaGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGTGCTGTaa < 1:2196578/51‑1 (MQ=255) gaagaaGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGTGCTGTaa < 1:1756489/51‑1 (MQ=255) gaagaaGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCatat < 1:1542242/69‑1 (MQ=255) aagaagGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCa > 1:3595434/1‑65 (MQ=255) aagaagGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTg < 1:1970545/70‑1 (MQ=255) agaagGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTg > 1:1221832/1‑69 (MQ=255) gaagGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTaaaa > 1:933501/1‑50 (MQ=255) agGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGa > 1:1861240/1‑70 (MQ=255) gggATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTaaaa > 1:618000/1‑47 (MQ=255) atatAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACg < 1:3680917/71‑1 (MQ=255) atatAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACg < 1:3607400/71‑1 (MQ=255) taATCTCTTTTGAACTTTAAGCTGAAAATGGTGCTGTaaaa > 1:773584/1‑41 (MQ=255) taATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTaaa < 1:1688037/40‑1 (MQ=255) taATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCAtttt < 1:587797/52‑1 (MQ=255) taATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTg < 1:1871105/59‑1 (MQ=255) taATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTg < 1:1680801/59‑1 (MQ=255) taATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAAc < 1:3366243/67‑1 (MQ=255) aTCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTa < 1:457979/36‑1 (MQ=255) aTCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTa < 1:2710096/36‑1 (MQ=255) aTCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTa < 1:983754/36‑1 (MQ=255) aTCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTa < 1:1210483/36‑1 (MQ=255) aTCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTa < 1:1379427/36‑1 (MQ=255) aTCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAg > 1:1875675/1‑40 (MQ=255) aTCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAg > 1:2253246/1‑40 (MQ=255) tctcTTTTGAACTTTAAGCTGAAAATGGCGCTGTaa < 1:3530412/36‑1 (MQ=255) tctcTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCAttt < 1:1905605/48‑1 (MQ=255) tctcTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCAttt < 1:3661393/48‑1 (MQ=255) tctcTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCt > 1:302802/1‑71 (MQ=255) tctcTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCACCAttt < 1:1690136/48‑1 (MQ=255) ctctTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCtt > 1:2012514/1‑71 (MQ=255) ctctTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCtt > 1:2966517/1‑71 (MQ=255) ttttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCttt < 1:2682270/69‑1 (MQ=255) ttttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCttt < 1:3323941/69‑1 (MQ=255) ttttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGt > 1:311422/1‑71 (MQ=255) tttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCtt < 1:1159656/67‑1 (MQ=255) ttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCa > 1:2316768/1‑45 (MQ=255) ttGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCa > 1:3472749/1‑45 (MQ=255) aaCTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATg < 1:1878528/71‑1 (MQ=255) cTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGcc > 1:803590/1‑71 (MQ=255) tttAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCg > 1:3150826/1‑71 (MQ=255) tAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGtt < 1:1632964/62‑1 (MQ=255) tAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGtt < 1:175868/62‑1 (MQ=255) tAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCgg < 1:2119205/70‑1 (MQ=255) tAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCg < 1:1859830/69‑1 (MQ=255) aaGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGa < 1:2981758/70‑1 (MQ=255) cTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATg > 1:1699443/1‑62 (MQ=255) tGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATgcgg > 1:256032/1‑71 (MQ=39) aaTGGCGCTGTAAAAGGCGCCATTTTCATATTTTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTg < 1:477360/71‑1 (MQ=21) aaTGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGt > 1:497830/1‑70 (MQ=35) tGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGc > 1:736220/1‑56 (MQ=35) tGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGc > 1:643194/1‑56 (MQ=35) tGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGc > 1:810000/1‑56 (MQ=35) tGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGc > 1:1045550/1‑56 (MQ=35) gcgcTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCg < 1:658648/56‑1 (MQ=35) cgcTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCtt < 1:2931425/44‑1 (MQ=38) cgcTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCtt < 1:3795738/44‑1 (MQ=38) cgcTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCtt < 1:1053693/44‑1 (MQ=38) | GAGAAGGCAGAAGCGAAAAAAGAGAGTGAAGAAGGGATATAATCTCTTTTGAACTTTAAGCTGAAAATGGCGCTGTAAAAGGCGCCATTTTCATATTGTAGACAACGTAGGCTTTGTTCATGCCGGATGCGGCGTG > Exported/937053‑937188 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |