| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,213,226 | A→G | 10.0% | *264R (TGA→CGA) | kdgR ← | predicted DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,213,226 | 0 | A | G | 10.0% | 168.7 / 10.0 | 60 | *264R (TGA→CGA) | kdgR | predicted DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (24/30); new base G (3/3); total (27/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
CTTTATTTTTCTCATGCTAAATAAAGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGTATGCAACATTGCG > Exported/1213159‑1213290 | cTTTATTTTTCTCATGCTAAATAAAGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGa < 1:2855425/70‑1 (MQ=255) tttATTTTTCTCATGCTAAATAAAGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGa < 1:1308173/69‑1 (MQ=255) ttATTTTTCTCATGCTAAATAAAGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACg > 1:2895384/1‑71 (MQ=255) aTTTTTCTCATGCTAAATAAAGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGa > 1:3708126/1‑71 (MQ=255) aTTTTTCTCATGCTAAATAAAGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGa > 1:1891076/1‑71 (MQ=255) aTGCTAAATAAAGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGa > 1:1840212/1‑71 (MQ=255) aTGCTAAATAAAGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGa < 1:1910321/71‑1 (MQ=255) aTGCTAAATAAAGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGa > 1:3853944/1‑71 (MQ=255) tGCTAAATAAAGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGAt < 1:888985/71‑1 (MQ=255) gCTAAATAAAGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGAt > 1:2440651/1‑70 (MQ=255) gCTAAATAAAGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGAt > 1:1241157/1‑70 (MQ=255) ataaaGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGAt < 1:3812497/65‑1 (MQ=255) aaaGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCAtt > 1:3861189/1‑71 (MQ=255) aaGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCAttt < 1:1070452/71‑1 (MQ=255) aaGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCAttt < 1:2909176/71‑1 (MQ=255) gAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTgg < 1:772511/71‑1 (MQ=255) aaCCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCGGAACGGATAGTCGTGATAACCCATTTggg < 1:1419853/71‑1 (MQ=255) aaCCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCGGAACGGATAGTCGTGATAACCCATTTggg < 1:907183/71‑1 (MQ=255) aCCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCGGAACGGATAGTCGTGATAACCCATTTggg < 1:1031231/70‑1 (MQ=255) aCCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTggg < 1:346414/70‑1 (MQ=255) gtctgtTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGa > 1:2338208/1‑70 (MQ=255) tctgtTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGaa < 1:2637297/70‑1 (MQ=255) ctgtTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAAt > 1:1431727/1‑71 (MQ=255) tgtTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAAtt > 1:2933587/1‑71 (MQ=255) tttGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAAttt < 1:1047690/70‑1 (MQ=255) tttGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAAt < 1:1394141/68‑1 (MQ=255) ttGATATTCCGACAGGTTCTTACTCTCATCGGAACGGATAGTCGTGATAACCCATTTGGGCAGAAAtttt > 1:1744576/1‑70 (MQ=255) ttGATATTCCGACAGGTTCTTACTCTCATCGGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTg > 1:3546275/1‑71 (MQ=255) ttGATATTCCGACAGGTTCTTACTCTCATCGGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTg > 1:129275/1‑71 (MQ=255) tGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCa > 1:1447618/1‑61 (MQ=255) tGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTgc > 1:510640/1‑71 (MQ=255) tGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTgc > 1:1480658/1‑71 (MQ=255) atTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATa > 1:3274478/1‑44 (MQ=255) ttCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCAtt < 1:2747044/50‑1 (MQ=255) ttCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCAtt < 1:2971724/50‑1 (MQ=255) ttCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCAtt < 1:1385387/50‑1 (MQ=255) tCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGaa > 1:1625/1‑58 (MQ=255) tCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGaa > 1:3608553/1‑58 (MQ=255) tCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGaa > 1:3363960/1‑58 (MQ=255) ccGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCAtt > 1:2054601/1‑48 (MQ=255) ccGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTg > 1:2956820/1‑50 (MQ=255) ccGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAAttt > 1:3133240/1‑61 (MQ=255) ccGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTg < 1:2962831/70‑1 (MQ=255) ccGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTg < 1:1986686/70‑1 (MQ=255) ccGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTg < 1:2497156/70‑1 (MQ=255) aCAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGt < 1:1871467/71‑1 (MQ=255) aCAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGt < 1:3423224/71‑1 (MQ=255) aCAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGAGGt < 1:1663588/71‑1 (MQ=255) cAGGTTCTTACTCTCATCAGAACGGATAGTCTTGATAACCCAttt < 1:1975079/45‑1 (MQ=255) gTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGc < 1:2628890/46‑1 (MQ=255) gTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGTATGc < 1:37296/71‑1 (MQ=255) gTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGTATGc < 1:168012/71‑1 (MQ=255) ttCTTACTCTCATCAGAACGGATAGTCGTGATAAcc < 1:895060/36‑1 (MQ=255) ttCTTACTCTCATCAGAACGGATAGTCGTGATAAcc < 1:941599/36‑1 (MQ=255) ttCTTACTCTCATCAGAACGGATAGTCGTGATAAcc < 1:296472/36‑1 (MQ=255) cTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGTATGCaa < 1:3339665/70‑1 (MQ=255) ttACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGTATGCAACa > 1:3841949/1‑71 (MQ=255) aCTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGTAt < 1:2721171/63‑1 (MQ=255) aCTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGTATGCAAc > 1:291276/1‑68 (MQ=255) aCTCTCAACAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGTATGCAACAt > 1:2348323/1‑70 (MQ=255) atcaGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGTATGCAACATTGCg < 1:3148962/68‑1 (MQ=255) tcaGAACGGATAGTCGTGATAACCCATTTGGGCAGAAAtt < 1:2449400/40‑1 (MQ=255) tcaGAACGGATAGTCGTGATAACCCATTTGGGCAGAAAtt < 1:965445/40‑1 (MQ=255) caGAACGGATAGTCGTGATAACCCATTTGGGCAGAAAtt < 1:1807242/39‑1 (MQ=255) | CTTTATTTTTCTCATGCTAAATAAAGAACCTGTCTGTTTGATATTCCGACAGGTTCTTACTCTCATCAGAACGGATAGTCGTGATAACCCATTTGGGCAGAAATTTTGCGCGCTGCGGTATGCAACATTGCG > Exported/1213159‑1213290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |