| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,436,114 | G→A | 9.5% | T608I (ACC→ATC) | rep ← | DNA helicase and single‑stranded DNA‑dependent ATPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,436,114 | 0 | G | A | 9.5% | 128.5 / 4.2 | 42 | T608I (ACC→ATC) | rep | DNA helicase and single‑stranded DNA‑dependent ATPase |
| Reads supporting (aligned to +/- strand): ref base G (12/26); new base A (2/2); total (14/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.90e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCAAAAAGCGGCTCGGCTCCGGGCGCACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCCAGCCGCCGCTCCTCATCGATATTATCTTCATC > Exported/2436046‑2436184 | gCAAAAAGCGGCTCGGCTCCGGGCGCACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGt > 1:426925/1‑70 (MQ=255) gCGGCTCGGCTCCGGGCGCACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCt < 1:865805/71‑1 (MQ=255) cggctcggctCCGGGCGCACCAGTTCGCCGTACTGCCGGCGTTCTTTACACAGCGTAAAGGTCAATTCCtt > 1:3802869/1‑71 (MQ=255) ggctcggctcCGGGCGCACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTc < 1:55010/71‑1 (MQ=255) gctcggctcCGGGCGCACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTc < 1:3571407/61‑1 (MQ=255) ggctcCGGGCGCACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGgc > 1:1637229/1‑71 (MQ=255) gggCGCACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAAtt < 1:3456972/55‑1 (MQ=255) gggCGCACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAAtt < 1:1593690/55‑1 (MQ=255) ggCGCACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAAtt < 1:2338174/54‑1 (MQ=255) ggCGCACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGt > 1:1028657/1‑70 (MQ=255) cgcACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAAt < 1:220869/71‑1 (MQ=255) cgcACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAAt < 1:3748836/71‑1 (MQ=255) cgcACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAAt < 1:2519265/71‑1 (MQ=255) cgcACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAAt < 1:3423327/71‑1 (MQ=255) gcACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTc < 1:2470469/56‑1 (MQ=255) cAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGa < 1:3444111/71‑1 (MQ=255) cAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGa < 1:3447961/71‑1 (MQ=255) ttCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTc < 1:456053/40‑1 (MQ=255) tCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGATCAATTCCTTCTGGgcgc < 1:1624095/55‑1 (MQ=255) tCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGATCAATTCCTTCTGGgcgc < 1:3502050/55‑1 (MQ=255) cGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATa < 1:3558265/70‑1 (MQ=255) cGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAg > 1:1173508/1‑71 (MQ=255) gCCGTACTGACGGCGTTCTTTACACAGCGTAAAGATCAATTCCTTCTGGGCGCgg > 1:2774740/1‑55 (MQ=255) gCCGTACTGACGGCGTTCTTTACACAGCGTAAAGATCAATTCCTTCTGGGCGCgg > 1:2779028/1‑55 (MQ=255) ccGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGc > 1:844919/1‑71 (MQ=255) cGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGcc < 1:2410427/71‑1 (MQ=255) tACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGa < 1:3787701/61‑1 (MQ=255) tACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGa < 1:1242546/61‑1 (MQ=255) tACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCCAg < 1:3784411/71‑1 (MQ=255) cTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTg > 1:817516/1‑42 (MQ=255) cTTTACACAGCGTAAAGGTCAATTCCTTGTGGGCGCGGGTAATGCCGACATAGGCCAGCCGCCGCTCCTCa > 1:378210/1‑71 (MQ=255) cTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCCAGCCGCCGCTCCTCa > 1:644747/1‑71 (MQ=255) acacAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCCAGCCGCCGCTCCTCATCGa > 1:2200406/1‑71 (MQ=255) cccaGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCCAGCCGCCGCTCCTCATCGa < 1:734198/68‑1 (MQ=255) cacaGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGTCATAGGCCAGCCGCCGCTCCTCATCGa < 1:3293927/70‑1 (MQ=255) cacaGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCCAGCCGCCGCTCCTCATCGa < 1:1770182/70‑1 (MQ=255) cacaGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCCAGCCGCCGCTCCTCATCGa < 1:889087/70‑1 (MQ=255) gCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCCAGCCGCCGCTCCTCATCGAtatta < 1:2566893/71‑1 (MQ=255) cGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCCAGCCGCCGCTCCTCATCGAtattat < 1:997518/71‑1 (MQ=255) gTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCCAGCCGCCGCTCCTCATCGATATTATc > 1:40601/1‑71 (MQ=255) aaGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCCAGCCGCCGCTCCTCATCGatat > 1:126305/1‑64 (MQ=255) aaGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCCAGCCGCCGCTCCTCATCGATATTATCTTc < 1:3101769/71‑1 (MQ=255) gTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCCAGCCGCCGCTCCTCATCGATATTATCTTCATc < 1:3680705/71‑1 (MQ=255) gTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCCAGCCGCCGCTCCTCATCGATATTATCTTCATc < 1:1109478/71‑1 (MQ=255) gTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCAAGCCGCCGCTCCTCATCGATATTATCTTCATc < 1:1419991/71‑1 (MQ=255) | GCAAAAAGCGGCTCGGCTCCGGGCGCACCAGTTCGCCGTACTGACGGCGTTCTTTACACAGCGTAAAGGTCAATTCCTTCTGGGCGCGGGTAATGCCGACATAGGCCAGCCGCCGCTCCTCATCGATATTATCTTCATC > Exported/2436046‑2436184 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |