| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,948,260 | G→A | 7.8% | intergenic (‑20/+118) | yjjB ← / ← yjjP | conserved inner membrane protein/predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,948,260 | 0 | G | A | 7.8% | 461.4 / 20.5 | 141 | intergenic (‑20/+118) | yjjB/yjjP | conserved inner membrane protein/predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (71/59); new base A (9/2); total (80/61) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 145 total aligned reads displayed.
CATAAAGGTTGACCACTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAG > Exported/2948193‑2948329 | cATAAAGGTTGACCACTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGc > 1:1723253/1‑71 (MQ=255) aTAAAGGTTGACCACTCAATATTCAACCCGCTGGTCATCAAGATCATTAGGGAACCATGACCTATCGAGc > 1:3063859/1‑70 (MQ=255) aaGGTTGACCACTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAag > 1:2665768/1‑71 (MQ=255) aaGGTTGACCACTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAag > 1:1444623/1‑71 (MQ=255) tGACCACTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAgcg > 1:3203502/1‑71 (MQ=255) tGACCACTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAgcg > 1:539213/1‑71 (MQ=255) gACCACTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAagcagc > 1:3195393/1‑69 (MQ=255) gACCACTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAgcg > 1:1151845/1‑70 (MQ=255) gACCACTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAgcg < 1:3501629/70‑1 (MQ=255) gACCACTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAgcg < 1:1327832/70‑1 (MQ=255) gACCACTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAgcg > 1:174551/1‑70 (MQ=255) cACTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGcaca > 1:3699604/1‑71 (MQ=255) cTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAagcag < 1:3315539/63‑1 (MQ=255) cTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAagcag < 1:1379901/63‑1 (MQ=255) cTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAagcag < 1:3030625/63‑1 (MQ=255) cAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAagcag < 1:726843/61‑1 (MQ=255) cAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAg > 1:1959638/1‑71 (MQ=255) aaTATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGc < 1:1412671/71‑1 (MQ=255) aaTATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGc > 1:1039572/1‑71 (MQ=255) aaTATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCAAGCCAAGCAGCGCACACCAGc > 1:2662849/1‑71 (MQ=255) aaTATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCAAGCCAAGCAGCGCACACCAGc > 1:1552414/1‑71 (MQ=255) tatTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCg > 1:2016853/1‑70 (MQ=255) ttCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTaa > 1:2550119/1‑71 (MQ=255) ttCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTaa > 1:227438/1‑71 (MQ=255) ttCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTaa > 1:3459651/1‑71 (MQ=255) ttCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTa < 1:620011/70‑1 (MQ=255) ttCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTa < 1:2753819/70‑1 (MQ=255) tCACCCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTa < 1:1537210/69‑1 (MQ=255) cAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAagcag > 1:2381853/1‑54 (MQ=255) aaCCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGc < 1:1715264/71‑1 (MQ=255) cccGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGccc > 1:3568918/1‑71 (MQ=255) cccGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGccc > 1:2892605/1‑71 (MQ=255) cccGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGcc > 1:3604842/1‑70 (MQ=255) ccGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCg < 1:671284/71‑1 (MQ=255) ccGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCg < 1:2363812/71‑1 (MQ=255) cTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAg > 1:3741693/1‑39 (MQ=255) cTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAg > 1:2020866/1‑39 (MQ=255) cTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAg > 1:3842307/1‑39 (MQ=255) cTGGTCATCAAGATCATTCGGGAACCATGAACTATCGAg > 1:3204872/1‑39 (MQ=255) tcatcaAGATCATTCGGGAACCATGACCTATCGAGCCAagc < 1:2193961/41‑1 (MQ=255) catcaAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGaa > 1:2719045/1‑71 (MQ=255) catcaAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGaa > 1:2383473/1‑71 (MQ=255) atcaAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGcac < 1:757589/46‑1 (MQ=255) atcaAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGcac < 1:3430475/46‑1 (MQ=255) atcaAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGcac < 1:1490874/46‑1 (MQ=255) atcaAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGaa < 1:2457373/70‑1 (MQ=255) tcaAGATCATTCGGGAACCATGACCTATCAAGCCAAGCAGCGCACACCAGCGTa < 1:1395107/54‑1 (MQ=255) tcaAGATCATTCGGGAACCATGACCTATCAAGCCAAGCAGCGCACACCAGCGTa < 1:3636946/54‑1 (MQ=255) caAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGcaca < 1:2566009/45‑1 (MQ=255) caAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGcaca < 1:577399/45‑1 (MQ=255) aaGATCATTCTGGAACCATGACCTATCGAGCCAag < 1:588400/35‑1 (MQ=255) aaGATCATTCGGGAACCATGACCTATCGAGCCCAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGtt > 1:1758230/1‑71 (MQ=255) aaGATCATTCGGGAACCATGACCTATCGAGCCAag < 1:905169/35‑1 (MQ=255) aaGATCATTCGGGAACCATGACCTATCGAGCCAag < 1:3175415/35‑1 (MQ=255) aaGATCATTCGGGAACCATGACCTATCGAGCCAag < 1:1838652/35‑1 (MQ=255) aaGATCATTCGGGAACCATGACCTATCGAGCCAag < 1:15226/35‑1 (MQ=255) aaGATCATTCGGGAACCATGACCTATCGAGCCAag < 1:2871733/35‑1 (MQ=255) aaGATCATTCGGGAACCATGACCTATCGAGCCAAGCAgcg > 1:763878/1‑40 (MQ=255) aaGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCAc < 1:1048531/62‑1 (MQ=255) aaGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGtt > 1:3463963/1‑71 (MQ=255) aaGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGt > 1:1101363/1‑70 (MQ=255) tgATCATTCGGGAACCATGACCTATCGAGCCAAGCAgcg < 1:1968595/38‑1 (MQ=255) aGATCATTCGGGAACCATGACCTATCGAGCCAAGCAgcg < 1:2699504/39‑1 (MQ=255) aGATCATTCGGGAACCATGACCTATCGAGCCAAGCAgcg < 1:1610923/39‑1 (MQ=255) aGATCATTCGGGAACCATGACCTATCGAGCCAAGCAgcg < 1:2637117/39‑1 (MQ=255) aGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGtt > 1:1442015/1‑70 (MQ=255) aGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTg < 1:1176391/71‑1 (MQ=255) aGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTg < 1:2460481/71‑1 (MQ=255) aTCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGca > 1:2175666/1‑39 (MQ=255) aTCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGca > 1:103329/1‑39 (MQ=255) aTCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGca > 1:1590336/1‑39 (MQ=255) aTCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGca > 1:230142/1‑39 (MQ=255) cATTCGGGAACCATGACCTATCGAGCCAAGCAGCGcaca < 1:319486/39‑1 (MQ=255) cATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACg > 1:684055/1‑64 (MQ=255) cATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAaca > 1:3065495/1‑71 (MQ=255) ttCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAacac > 1:374106/1‑70 (MQ=255) ttCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAacac > 1:2786004/1‑70 (MQ=255) cGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCa < 1:783116/70‑1 (MQ=255) cGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCa < 1:742602/70‑1 (MQ=255) gggAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCa < 1:831510/69‑1 (MQ=255) gggAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATc > 1:181855/1‑71 (MQ=255) gggAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATc > 1:407450/1‑71 (MQ=255) aCCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACggg < 1:1277668/51‑1 (MQ=255) aCCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCaa < 1:3228618/71‑1 (MQ=255) aCCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCaa < 1:3521557/71‑1 (MQ=255) aCCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCa > 1:2445218/1‑70 (MQ=255) aTGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGc > 1:3858309/1‑71 (MQ=255) aTGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGc > 1:109170/1‑71 (MQ=255) tGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGcc > 1:2180622/1‑71 (MQ=255) tGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGcc > 1:902496/1‑71 (MQ=255) tGACCTATCAAGCCAAGCAGCGCAGACCAGCGTAACGCCCGCACGGGAACGTTGaa > 1:803957/1‑56 (MQ=255) tGACCTATCAAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGaa > 1:1844771/1‑56 (MQ=255) aCCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCg < 1:2199413/70‑1 (MQ=255) tATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAAc > 1:1664964/1‑45 (MQ=255) tATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCg > 1:2950642/1‑71 (MQ=255) tATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCg > 1:729319/1‑71 (MQ=255) tCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCg > 1:1813423/1‑69 (MQ=255) tCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCg < 1:1967404/69‑1 (MQ=255) gAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAg > 1:2423807/1‑70 (MQ=255) gAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAg > 1:827067/1‑70 (MQ=255) | CATAAAGGTTGACCACTCAATATTCAACCCGCTGGTCATCAAGATCATTCGGGAACCATGACCTATCGAGCCAAGCAGCGCACACCAGCGTAACGCCCGCACGGGAACGTTGAACACCATCGCAAAGCCGACCGCAG > Exported/2948193‑2948329 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |