| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1955750 = | 114 (1.550) | 3 (0.040) | 3/92 | NT | 2.5% | coding (242/549 nt) | ygfA | predicted ligase |
| ? | Exported | 1955772 = | 127 (1.880) | coding (264/549 nt) | ygfA | predicted ligase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAGCACGTCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/1955823‑1955750‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtGATGAACAGGTTGAAGATCCATGAGCCAAAATTGGATGTGCGTGACGTGCTACCCCTTTCCCGATTAGAC > Exported/1955772‑1955841 TAGCACGTCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGAT < 1:4747051/71‑1 GCACGTCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGG > 1:2194201/1‑71 GCACGTCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGG > 1:1554278/1‑71 GCACGTCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGG > 1:4676321/1‑71 CACGTCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT < 1:4150396/71‑1 ACGTCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT > 1:3518037/1‑70 ACGTCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT > 1:3553256/1‑70 ACGTCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT > 1:1818946/1‑70 ACGTCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT > 1:1813486/1‑70 CGTCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT < 1:3765097/69‑1 CGTCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT < 1:3616282/69‑1 CGTCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT < 1:1243802/69‑1 GTCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT < 1:4724221/68‑1 TCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT < 1:3086533/67‑1 ATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATG < 1:4458793/52‑1 ATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATG < 1:267829/52‑1 TTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT > 1:1093891/1‑52 TTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT > 1:3301117/1‑52 TTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT > 1:1894172/1‑52 TTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT > 1:1878921/1‑52 TTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATG < 1:2660847/50‑1 CCAGTTCGCTTTGCGGATGGTGATGAACAGGTTGAAGATCCA < 1:1926466/42‑1 AGTTCGCTTTGCGGATGGTGATGAACAGGTTGAAGATCCATG > 1:4344565/1‑42 GTTCGCTTTGCGGATGGTGATGAACAGGTTGAAGATCCATG > 1:1507824/1‑41 TGGTGATGAACAGGTTGAAGATCCATGAGCCAAAATTGGATGTG < 1:3216262/44‑1 TGGTGATGAACAGGTTGAAGATCCATGAGCCAAAATTGGATGTG < 1:4440171/44‑1 TGGTGATGAACAGGTTGAAGATCCATGAGCCAAAATTGGATGTG < 1:946866/44‑1 GTGATGAACAGGTTGAAGATCCATGAGCCAAAATTGGATGTGCGTGACGTGCTACCCCTTTCCCGATTAGA > 1:468857/1‑71 GTGATGAACAGGTTGAAGATCCATGAGCCAAAATTGGATGTGCGTGACGTGCTACCCCTTTCCCGATTA < 1:3450582/69‑1 GTGATGAACAGGTTGAAGATCCATGAGCCAAAATTGGATGTGCGTGACGTGCTACCCCTTTCCCGATTA > 1:2631107/1‑69 GTGATGAACAGGTTGAAGATCCATGAGCCAAAATTGGATGTGCGTGACGTGCTACCCCTTTCCAGATTA > 1:1083552/1‑69 TGATGAACAGGTTGAAGATCCATGAGCCAAAATTGGATGTGCGTGACGTGCTACCCCTTTCCCGATTAGAC > 1:3675557/1‑71 TAGCACGTCACGCACATCCAATTTTGGCTCATGGATCTTCAACCTGTTCATCACCAGTTCGCTTTGCGGATGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/1955823‑1955750‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtGATGAACAGGTTGAAGATCCATGAGCCAAAATTGGATGTGCGTGACGTGCTACCCCTTTCCCGATTAGAC > Exported/1955772‑1955841 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |