| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 436833 | 98 (1.330) | 101 (1.370) | 44/100 | NT | 54.4% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | Exported | 1803907 = | 71 (0.960) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
Only 100 of 245 total aligned reads displayed.
ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGAT > Exported/436765‑436903 | aTCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaaaa > 1:769541/1‑71 (MQ=255) gAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACg < 1:4069470/70‑1 (MQ=255) acacATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGtt < 1:1208151/70‑1 (MQ=255) cacaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga > 1:2324796‑M1/1‑63 (MQ=255) catcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaat > 1:3398449‑M1/1‑61 (MQ=255) catcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTg > 1:3858484/1‑68 (MQ=255) atcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAAc < 1:1728462/63‑1 (MQ=255) catGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa > 1:2025143‑M1/1‑58 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaat > 1:2490878‑M1/1‑57 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:3328011‑M1/71‑16 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:3570453‑M1/71‑16 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACg < 1:3599030/60‑1 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACg < 1:3773990/60‑1 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaa < 1:2238759/71‑1 (MQ=255) tGCAGTCGATACAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaa < 1:3212693/71‑1 (MQ=255) aGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgagg < 1:3428397‑M1/71‑19 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtc < 1:2405737‑M1/71‑21 (MQ=255) tCGATGAAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaa > 1:940462/1‑51 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggaca > 1:3781132/1‑69 (MQ=255) aTGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggacaaag > 1:3579348/1‑71 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatac < 1:4445998‑M1/71‑25 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggacaaag > 1:506010/1‑70 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc < 1:429997/71‑1 (MQ=255) tGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc < 1:2725043/71‑1 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacc > 1:4031448‑M1/1‑45 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacc > 1:132777‑M1/1‑45 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCaa < 1:1013035/71‑1 (MQ=255) cAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCa < 1:4257545/70‑1 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:3648020‑M1/71‑28 (MQ=255) aaTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAAt < 1:4106067/71‑1 (MQ=255) aTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaa < 1:4679740‑M1/71‑29 (MQ=255) aTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgaca < 1:2268990/56‑1 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaagg > 1:2153869/1‑58 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg > 1:1396608‑M1/1‑40 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaa > 1:1046516‑M1/1‑40 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCa < 1:230588/70‑1 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCa < 1:1583343/70‑1 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga < 1:1836171‑M1/71‑34 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:4381503‑M1/69‑32 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaat < 1:1955287‑M1/52‑15 (MQ=255) ggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga > 1:2821331‑M1/1‑37 (MQ=255) ggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga > 1:2866721‑M1/1‑37 (MQ=255) ggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc < 1:1975282/61‑1 (MQ=255) ggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGc < 1:255482/61‑1 (MQ=255) gcggAATTGATTGAGAAGGTTTGCGGAACTATCTACcggctgaaattaatgaggtcatacccaaatgga > 1:1966124‑M1/1‑36 (MQ=255) gcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAga > 1:393975/1‑47 (MQ=255) gcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATc > 1:4223408/1‑70 (MQ=255) gcggAATTGATTGAGAAGGTTTGAGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga > 1:4147506‑M1/1‑36 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg < 1:4100945‑M1/71‑41 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg > 1:4757768‑M1/1‑31 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcg > 1:634002‑M1/1‑31 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccc < 1:3250677‑M1/56‑27 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaa < 1:1482580‑M1/39‑10 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggacaaag > 1:4044581/1‑53 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCa < 1:2619474/61‑1 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCa < 1:1235981/61‑1 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaatt > 1:2477291‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaatt > 1:417186‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaatt > 1:2895545‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaatt > 1:3139299‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaatt > 1:223408‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAga > 1:4034999/1‑39 (MQ=255) ttgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttac < 1:2623255‑M1/71‑46 (MQ=255) ttgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttac < 1:3184113‑M1/71‑46 (MQ=255) ttgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTg > 1:1303426/1‑70 (MQ=255) gagaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcat > 1:1083866‑M1/1‑24 (MQ=255) gagaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCa < 1:545050/70‑1 (MQ=255) ggTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccatt < 1:3284302‑M1/71‑53 (MQ=255) ggTTTGCGGAACTATCTAAcggctgaaactaatgaggtcatacccaaatggatagttcgtttacgcccatt < 1:3044412‑M1/71‑53 (MQ=255) gTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccatt < 1:2090752‑M1/70‑53 (MQ=255) gTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCa > 1:3676976/1‑43 (MQ=255) gTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCa > 1:1665731/1‑43 (MQ=255) gTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCa > 1:1642124/1‑43 (MQ=255) gTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCa > 1:80908/1‑43 (MQ=255) tttGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattg > 1:398355‑M1/1‑17 (MQ=255) tttGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccat > 1:730342‑M1/1‑17 (MQ=255) tttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAAcc > 1:3913817/1‑71 (MQ=255) tGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggat > 1:1409359‑M1/1‑15 (MQ=255) tGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga > 1:4403354‑M1/1‑15 (MQ=255) tGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCt < 1:170851/70‑1 (MQ=255) tGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCt < 1:1999100/70‑1 (MQ=255) gCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTg > 1:3504853/1‑70 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaca < 1:973909‑M1/70‑58 (MQ=255) cGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGc < 1:302625/70‑1 (MQ=255) ggAACTATCTAAcggctgaaattaatgaggtcatacccaaatg < 1:1560844‑M1/43‑32 (MQ=255) tATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCa < 1:151457/58‑1 (MQ=255) tATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCa < 1:1746080/58‑1 (MQ=255) tATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCa < 1:4497384/58‑1 (MQ=255) aTCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:2460908‑M1/1‑6 (MQ=255) aTCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:2658840‑M1/1‑6 (MQ=255) aTCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaaca > 1:4418534/1‑69 (MQ=255) tCTAAcggcttaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaa < 1:3059385‑M1/70‑66 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaa < 1:3851693‑M1/70‑66 (MQ=255) aaaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAAt > 1:1874909/1‑42 (MQ=255) aaaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac > 1:4634279/1‑61 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatt < 1:2536670‑M1/70‑70 (MQ=255) aaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACaa > 1:4541569/1‑40 (MQ=255) aaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACaa > 1:3351258/1‑40 (MQ=255) aaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGtgat < 1:880643/71‑1 (MQ=255) aaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGtg < 1:4462907/69‑1 (MQ=255) | ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGAT > Exported/436765‑436903 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |