| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 37564 = | 42 (0.570) | 5 (0.070) | 4/92 | NT | 11.3% | coding (501/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding |
| ? | Exported | 37583 = | 40 (0.590) | coding (482/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding | |||||
AAACCATTCGGTGTAGACAGGTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGT > Exported/37513‑37653 | tggtaagatttatcttaatggtagtaagtgttttattaccagcagcgcctaCACCACGATGTACGGGgtgt > 1:1449069‑M1/52‑71 (MQ=255) ccATTCGGTGTGGACAGGTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAgg > 1:1217161/1‑71 (MQ=255) tCGGTGTAGACAGGTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCgct > 1:4521059/1‑71 (MQ=255) cGGTGTAGACAGGTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCgct < 1:2513501/70‑1 (MQ=255) cGGTGTAGACAGGTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCgct < 1:499057/70‑1 (MQ=255) gtgtAGACAGGTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCgctgct < 1:1622385/71‑1 (MQ=255) gtgtAGACAGGTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCgctgct < 1:89835/71‑1 (MQ=255) tAGACAGGTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGt < 1:1554122/71‑1 (MQ=255) aGGTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGtaataa < 1:1151841/71‑1 (MQ=255) gTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATaaaa < 1:1166295/71‑1 (MQ=255) gTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATaaaa < 1:3669989/71‑1 (MQ=255) tGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAacac > 1:1934757/1‑71 (MQ=255) agtgttttattaccagcagcgcctaCACCACGATGTACGGGgtgt < 1:2064866‑M1/20‑1 (MQ=255) agtgttttattaccagcagagcctaCACCACGATGTACGGGgtgt < 1:3676172‑M1/20‑1 (MQ=255) ggAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTtac > 1:4195583/1‑70 (MQ=255) gCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCAtt < 1:646583/71‑1 (MQ=255) gCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCAtt < 1:4228925/71‑1 (MQ=255) gCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCAt > 1:2987370/1‑70 (MQ=255) ccccGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCAtt > 1:349669/1‑70 (MQ=255) ccGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTtac > 1:1439670/1‑61 (MQ=255) ccGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCAtt > 1:2073147/1‑68 (MQ=255) ccGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCAt > 1:2514579/1‑67 (MQ=255) tCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGAt > 1:4369039/1‑70 (MQ=255) tCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATa < 1:1279075/71‑1 (MQ=255) cgcgcgCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATa > 1:690903/1‑70 (MQ=255) gcgcCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATc < 1:4183105/71‑1 (MQ=255) cgcCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCt > 1:1294596/1‑71 (MQ=255) cgcCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCt > 1:2477733/1‑71 (MQ=255) cATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAaca < 1:2348922/45‑1 (MQ=255) tCACCACGATTTACGGGGTGTAGGCGCTGCTGGtaat < 1:3266023/37‑1 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGtaat < 1:4733848/37‑1 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGtaat < 1:946352/37‑1 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGtaat < 1:1282670/37‑1 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACt > 1:4294653/1‑45 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACt > 1:588668/1‑45 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACt > 1:3578878/1‑45 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCa > 1:999459/1‑71 (MQ=255) tCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCa > 1:1592947/1‑71 (MQ=255) acaccccgtacatcgtggtgTAGGCTCTGCTGGTAATAAAACACt < 1:3676172‑M2/25‑1 (MQ=255) acaccccgtacatcgtggtgTAGGCGCTGCTGGTAATAAAACACt < 1:2064866‑M2/25‑1 (MQ=255) acaccccgtacatcgtggtgTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCa > 1:1449069‑M2/21‑71 (MQ=255) caccccgtacatcgtggtgTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCAt > 1:1913357‑M2/20‑71 (MQ=255) accccgtacatcgtggtgTAGGCGCTGCTGGTAATAAAACACTta > 1:793246‑M2/19‑45 (MQ=255) ACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAaca < 1:4626891‑M1/41‑1 (MQ=255) ACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCAtt < 1:3395330‑M1/71‑1 (MQ=255) ACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCAtt < 1:3707718‑M1/71‑1 (MQ=255) ACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCAtt < 1:1891200‑M1/71‑1 (MQ=255) ACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCAtt < 1:557927‑M1/71‑1 (MQ=255) ACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCAt > 1:2130959‑M1/1‑70 (MQ=255) CACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:3468695‑M1/1‑71 (MQ=255) CACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:439874‑M1/1‑71 (MQ=255) CACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:4761942‑M1/1‑71 (MQ=255) CACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:2301074‑M1/1‑71 (MQ=255) CACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:1237092‑M1/1‑71 (MQ=255) CACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:3358401‑M1/1‑71 (MQ=255) CACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:2566240‑M1/1‑71 (MQ=255) CACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc > 1:1358382‑M1/1‑71 (MQ=255) cGATGTACGGGGTGTAGGCGCTGCTGGTAATaaaa > 1:3038932/1‑35 (MQ=255) cGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAAt < 1:282525/58‑1 (MQ=255) cGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCt > 1:2310963/1‑60 (MQ=255) gATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc < 1:2091196/68‑1 (MQ=255) aTGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCt > 1:304980/1‑58 (MQ=255) aTGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACg > 1:4494376/1‑71 (MQ=255) tACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGt < 1:460639/71‑1 (MQ=255) cGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATaa > 1:63954/1‑49 (MQ=255) ggggTGTAGGCGCTGCTGGTAATAAAACACTTACTACCAtt < 1:2261611/41‑1 (MQ=255) ggggTGTAGGCGCTGCTGGTAATAAAACACTTACTACCAtt < 1:2426157/41‑1 (MQ=255) ggggTGTAGGCGCTGCTGGTAATAAAACACTTACTACCAtt < 1:2992961/41‑1 (MQ=255) gggTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATaa < 1:1466302/71‑1 (MQ=255) tgTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTc < 1:3912411‑M2/55‑1 (MQ=255) tAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTAc > 1:2058581/1‑49 (MQ=255) tAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTAc > 1:422825/1‑49 (MQ=255) tAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGt > 1:3701010/1‑71 (MQ=255) | AAACCATTCGGTGTAGACAGGTTTGTCCGGAGAAGCCCCGTCGCGCGCCATCACCACGATGTACGGGGTGTAGGCGCTGCTGGTAATAAAACACTTACTACCATTAAGATAAATCTTACCATTTCTACGGGTATAAGTCGT > Exported/37513‑37653 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |