| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,239,028 | C→T | 7.8% | D14N (GAC→AAC) | zraR ← | fused DNA‑binding response regulator in two‑component regulatory system with ZraS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,239,028 | 0 | C | T | 7.8% | 368.2 / 14.9 | 115 | D14N (GAC→AAC) | zraR | fused DNA‑binding response regulator in two‑component regulatory system with ZraS |
| Reads supporting (aligned to +/- strand): ref base C (45/61); new base T (5/4); total (50/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 138 total aligned reads displayed.
TGTTCGCCAGCGCGACGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCTTACGCGTAATATTGAC > Exported/2238959‑2239096 | tGTTCGCCAGCGCGACGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGtca > 1:3203967/1‑71 (MQ=255) tCGCCAGCGCGACGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGtcatca > 1:2545436/1‑71 (MQ=255) ggCCAGCGCGACGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTcatcat > 1:4126379/2‑71 (MQ=255) ggCCAGCGCGACGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTcatcat > 1:4121067/2‑71 (MQ=255) cGCCAGCGCGACGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGtcatca < 1:74605/70‑1 (MQ=255) cGCCAGCGCGACGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTcatcat > 1:1681504/1‑71 (MQ=255) cGCCAGCGCGACGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTcatcat > 1:1828921/1‑71 (MQ=255) gCCAGCGCGACGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCatcatc < 1:3460741/71‑1 (MQ=255) gCCAGCGCGACGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCatcatc < 1:2399908/71‑1 (MQ=255) aGCGCGACGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATccac < 1:1928159/71‑1 (MQ=255) cgcgACGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATccacca > 1:3337121/1‑71 (MQ=255) cgcgACGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATccacca > 1:4693/1‑71 (MQ=255) aCGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAg < 1:1638029/71‑1 (MQ=255) cGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAg > 1:3269969/1‑70 (MQ=255) cGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAg > 1:3066046/1‑70 (MQ=255) cGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAg > 1:2692572/1‑70 (MQ=255) gTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCTTCATCCACCACCAGaa > 1:962756/1‑71 (MQ=255) gTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGaa > 1:461133/1‑71 (MQ=255) ttATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATcc < 1:1270245/60‑1 (MQ=255) gCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTTATCATCCACCACCAGAATATCg < 1:1512470/70‑1 (MQ=255) gCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTTATCATCCACCACCAGAATATCg < 1:1748337/70‑1 (MQ=255) gCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTTATCATCCACCACCAGAATATCg < 1:3473605/70‑1 (MQ=255) cAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTcatcat < 1:1974107/49‑1 (MQ=255) cAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTcatcat < 1:1110226/49‑1 (MQ=255) cAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTcatcat < 1:3246845/49‑1 (MQ=255) gCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGtcat > 1:141358/1‑44 (MQ=255) gCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGtcat > 1:903208/1‑44 (MQ=255) gCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGAtattat > 1:4203788/1‑71 (MQ=255) gCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGAtattat > 1:2445117/1‑71 (MQ=255) ccGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGa < 1:2364681/57‑1 (MQ=255) ccGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGata > 1:3113483/1‑66 (MQ=255) cgcgCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATcca > 1:3040062/1‑48 (MQ=255) cgcgCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCg < 1:716046/71‑1 (MQ=255) cgcgCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCg < 1:721704/71‑1 (MQ=255) gcgcAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGt < 1:3828606/71‑1 (MQ=255) gcAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGtca > 1:86886/1‑38 (MQ=255) gcAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGtca > 1:2321734/1‑38 (MQ=255) gcAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGtca > 1:754416/1‑38 (MQ=255) aaGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGa > 1:2613133/1‑54 (MQ=255) aaGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGa > 1:1320711/1‑54 (MQ=255) aaGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGa > 1:2137761/1‑54 (MQ=255) aaGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGa > 1:3172180/1‑54 (MQ=255) aaGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCAt < 1:460051/70‑1 (MQ=255) aaGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATc < 1:3544039/71‑1 (MQ=255) aaGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATc < 1:3942908/71‑1 (MQ=255) aaGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATc < 1:621435/71‑1 (MQ=255) aaGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATc > 1:277153/1‑71 (MQ=255) aGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCTTCATcc < 1:610090/71‑1 (MQ=255) gCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCt > 1:585587/1‑71 (MQ=255) ccTGCAAAATAGTGCAGTGGCTAATGTTATCATCCACCACCAGAATATCGATATTATCGTGCGTc > 1:3877209/1‑65 (MQ=255) ccTGCAAAATAGTGCAGTGGCTAATGTTATCATCCACCACCAGAATATCGATATTATCGTGCGTCa > 1:4302963/1‑66 (MQ=255) ccTGCAAAATAGTGCAGTGGCTAATGTTATCATCCACCACCAGAATATCGATATTATCGTGCGTCa > 1:2534562/1‑66 (MQ=255) ccTGCAAAATAGTGCAGTGGCTAATGTTATCATCCACCACCAGAATATCGATATTATCGTGCGTCa > 1:3832524/1‑66 (MQ=255) ccTGCAAAATAGAGCAGTGGCTAATGTTATCATCCACCACCAGAATATCGATATTATCGTGCGTCa > 1:2053913/1‑66 (MQ=255) gCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGatat < 1:95955/51‑1 (MQ=255) cAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGaa > 1:1176097/1‑41 (MQ=255) cAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGa > 1:3785883/1‑40 (MQ=255) cAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCg > 1:3516402/1‑46 (MQ=255) cAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCg > 1:657291/1‑46 (MQ=255) cAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTtgtg < 1:1760643/70‑1 (MQ=255) cAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTtgt < 1:3835136/69‑1 (MQ=255) cAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTtgt < 1:1441036/69‑1 (MQ=255) aaTAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGAtatt < 1:160008/48‑1 (MQ=255) aaTAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGAtatt < 1:4374121/48‑1 (MQ=255) aaTAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGAtatt < 1:2593706/48‑1 (MQ=255) aaTAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGt < 1:580929/70‑1 (MQ=255) aaTAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATAGATATTATCGTGCGTCATCCTTGTGGGTc < 1:4017187/71‑1 (MQ=255) aTAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTcc > 1:3031907/1‑71 (MQ=255) aTAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTcc > 1:4419349/1‑71 (MQ=255) tAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTtg < 1:2525934/63‑1 (MQ=255) tAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCt < 1:4653740/71‑1 (MQ=255) gTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATcc > 1:2131507/1‑58 (MQ=255) gTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTtgtg > 1:636712/1‑63 (MQ=255) gTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTtgtg > 1:1286994/1‑63 (MQ=255) gTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCtt < 1:42258/70‑1 (MQ=255) gTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCtt < 1:1837260/70‑1 (MQ=255) gTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCtt < 1:3770196/70‑1 (MQ=255) gTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCTTa < 1:2953880/71‑1 (MQ=255) gTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCTTa < 1:3974428/71‑1 (MQ=255) tGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGAtatt < 1:309698/43‑1 (MQ=255) tGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGAtatt < 1:4142378/43‑1 (MQ=255) tGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGAtatt < 1:363667/43‑1 (MQ=255) tGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGAtatt < 1:814273/43‑1 (MQ=255) tGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCTTAc < 1:296481/71‑1 (MQ=255) tGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCTTACGCGTa < 1:335255/71‑1 (MQ=255) gCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCTTACGCGTAat < 1:4632303/71‑1 (MQ=255) gCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCTTACGCGTAat < 1:2753174/71‑1 (MQ=255) cTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCTTACGCGTAata > 1:3645141/1‑71 (MQ=255) aaTGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTgg < 1:184143/53‑1 (MQ=255) aaTGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTgg < 1:1502858/53‑1 (MQ=255) aaTGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTgg < 1:2876466/53‑1 (MQ=255) aaTGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCTTACGCGTAatat > 1:4038379/1‑70 (MQ=255) aaTGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCTTACGCGTAata > 1:527637/1‑69 (MQ=255) aaTGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCTTACGCGTAATAtt > 1:576855/1‑71 (MQ=255) gTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCTTACGCGTaa < 1:1692762/64‑1 (MQ=255) gTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCTTACGCGTAATATTGAc > 1:3166656/1‑71 (MQ=255) tcatcaTCCACCACCAGAATATCGATATTATCGTGCGTCATCCTtgt > 1:2316077/1‑47 (MQ=255) catcatCCACCACCAGAATATCGATATTATCGTGCGTCATCCTtg > 1:3243287/1‑45 (MQ=255) catcatCCACCACCAGAATATCGATATTATCGTGCGTCATCCTtg > 1:1012234/1‑45 (MQ=255) catcatCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCTTACGCGTAata > 1:505159/1‑64 (MQ=255) | TGTTCGCCAGCGCGACGTTATAGCCCCAGCCGCGCAGTAAAGCCTGCAAAATAGTGCAGTGGCTAATGTCATCATCCACCACCAGAATATCGATATTATCGTGCGTCATCCTTGTGGGTCCTTACGCGTAATATTGAC > Exported/2238959‑2239096 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |