| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 202,703 | G→A | 100% | noncoding (108/1542 nt) | rrsH → | 16S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 202,703 | 0 | G | A | 100.0% | 20.8 / NA | 8 | noncoding (108/1542 nt) | rrsH | 16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (3/5); total (3/5) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTA > Exported/202643‑202714 | gcatgctttacacatgcaagtcgaacggtaacagggagcttgctccGCTGACGAGTGGCGAACGGGTGAGt > 1:3655334‑M1/47‑71 (MQ=255)gcatgctttacacatgcaagtcgaacggtaacagggagcttgctccGCTGACGAGTGGCGAACGGGTGAGt > 1:3774788‑M1/47‑71 (MQ=255) acatgcaagtcgaacggtaacagggagcttgctccGCTGACGAGTGGCGAACGGGTGAGTa < 1:1081818‑M1/26‑1 (MQ=255) acatgcaagtcgaacggtaacagggagcttgctccGCTGACGAGTGGCGAACGGGTGAGTa < 1:1832090‑M1/26‑1 (MQ=255) acatgcaagtcgaacggtaacagggagcttgctccGCTGACGAGTGGCGAACGGGTGAGTa < 1:4130444‑M1/26‑1 (MQ=255) acatgcaagtcgaacggtaacagggagcttgctccGCTGACGAGTGGCGAACGGGTGAGTa < 1:4582169‑M1/26‑1 (MQ=255) atgcaagtcgaacggtaacagggagcttgctccGCTGACGAGTGGCGAACg < 1:3652905‑M1/18‑1 (MQ=255) ttaacagggagcttgctccGCTGACGAGTGGCGAACGGGTGAGt > 1:2457825‑M1/20‑44 (MQ=255) | CTAACACATGCAAGTCGAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTA > Exported/202643‑202714 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |