| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,549,980 | A→G | 6.0% | T353A (ACC→GCC) | kbl → | glycine C‑acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,549,980 | 0 | A | G | 6.0% | 200.4 / 3.7 | 67 | T353A (ACC→GCC) | kbl | glycine C‑acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (36/27); new base G (2/2); total (38/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
GTCATGCTTGGTGATGCGGTAGTGGCGCAGAAATTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTACCCAGATGTCTGCGGCG > Exported/2549911‑2550045 | gTCATGCTTGGTGATGCGGTAGTGGCGCAGAAATTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTAc < 1:260122/71‑1 (MQ=255) aTGCTTGGTGATGCGGTAGTGGCGCAGAAATTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCgg > 1:1418456/1‑71 (MQ=255) gCGGTAGTGGCGCAGAAATTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATcc > 1:2286778/1‑71 (MQ=255) ggTAGTGGCGCAGAAATTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATcctg > 1:50432/1‑69 (MQ=255) gTGGCGCAGAAATTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGt < 1:1458951/71‑1 (MQ=255) tGGCGCAGAAATTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGt < 1:1572095/67‑1 (MQ=255) ggCGCAGAAATTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTc > 1:3137757/1‑71 (MQ=255) gcgcAGAAATTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTcc < 1:737643/71‑1 (MQ=255) cgcAGAAATTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCg < 1:4033077/71‑1 (MQ=255) gcAGAAATTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGa < 1:3530152/71‑1 (MQ=255) cAGAAATTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGa < 1:4490359/70‑1 (MQ=255) cAGAAATTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGa > 1:651451/1‑70 (MQ=255) aTTTGCCCGTGAGCTGCAAAAAGAGGTCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGt > 1:4172693/1‑70 (MQ=255) aTTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGt > 1:4103624/1‑70 (MQ=255) aTTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGt > 1:4115408/1‑70 (MQ=255) aTTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGt > 1:2571488/1‑70 (MQ=255) tttGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCa < 1:4281559/71‑1 (MQ=255) cGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGcgcg > 1:4321849/1‑71 (MQ=255) cGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGcgcg < 1:3788298/71‑1 (MQ=255) cGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGcgcg < 1:1864243/71‑1 (MQ=255) gTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAg < 1:4344391/60‑1 (MQ=255) gTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGcgcg > 1:1801204/1‑70 (MQ=255) aGCTGCAAAAAGAGGGCATTTACGTTACCGGTttcttc > 1:964847/1‑38 (MQ=255) aGCTGCAAAAAGAGGGCATTTACGTTACCGGTttcttc > 1:3433163/1‑38 (MQ=255) gCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTc < 1:225757/71‑1 (MQ=255) gCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTc < 1:3743680/71‑1 (MQ=255) tGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTa < 1:2330842/37‑1 (MQ=255) tGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTa < 1:443314/37‑1 (MQ=255) tGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTa < 1:2046466/37‑1 (MQ=255) tGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCg < 1:4057804/50‑1 (MQ=255) gCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTa > 1:673668/1‑65 (MQ=255) gCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTa > 1:2140435/1‑65 (MQ=255) gCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTa > 1:2344823/1‑71 (MQ=255) cAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGaa > 1:1226122/1‑50 (MQ=255) aaaaGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGt > 1:3446557/1‑52 (MQ=255) aaaaGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTc > 1:4366627/1‑53 (MQ=255) aaaaGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTc > 1:2209142/1‑53 (MQ=255) aaaaGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTc > 1:483838/1‑53 (MQ=255) aaaGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTAcc > 1:1117611/1‑69 (MQ=255) aaaGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTACCCa < 1:169906/71‑1 (MQ=255) aaaGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTACCCa < 1:3072121/71‑1 (MQ=255) aaaGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTACCCa < 1:3348982/71‑1 (MQ=255) aaGAGGGCATTTACGTTACCGGTTTCTTCTATCCgg < 1:631156/36‑1 (MQ=255) agagGGCATTTACGTTGCCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTAcc > 1:2603895/1‑67 (MQ=255) agagGGCATTTACGTTGCCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTAcc > 1:2609280/1‑67 (MQ=255) gagGGCATTTACGTTGCCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTACCCAGAt < 1:3934380/71‑1 (MQ=255) ggCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTACCCAGATGTc > 1:3529109/1‑71 (MQ=255) cATTTACGTTGCCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTACCCAGATGTCTg < 1:3796069/71‑1 (MQ=255) cATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTc > 1:1107095/1‑56 (MQ=255) cATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTc > 1:474579/1‑56 (MQ=255) cATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTc > 1:1430123/1‑56 (MQ=255) aTTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGcgcg < 1:189132/50‑1 (MQ=255) aTTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGcgcg < 1:1129479/50‑1 (MQ=255) tttACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGt < 1:1095285/56‑1 (MQ=255) ttACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTACCCa < 1:3058993/60‑1 (MQ=255) tACGTTACCGGTTTCTTCTATCCGGTCGTTCCGaa > 1:3313646/1‑35 (MQ=255) tACGTTACCGGTTTCTTCTATCCGGTCGTTCCGaa > 1:2579344/1‑35 (MQ=255) tACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGgcgc > 1:465396/1‑46 (MQ=255) tACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTAc > 1:37622/1‑56 (MQ=255) tACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTAc > 1:755870/1‑56 (MQ=255) tACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTACCCAGATGTCTgcggc > 1:411124/1‑71 (MQ=255) aCGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTACCCAGATGTCTgcggcg > 1:4495398/1‑71 (MQ=255) gTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTAtt < 1:929489/48‑1 (MQ=255) gTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTAtt < 1:3490427/48‑1 (MQ=255) tACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCg > 1:3116790/1‑48 (MQ=255) tACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCg > 1:3741569/1‑48 (MQ=255) tACCGGTTTCTTATATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCg > 1:4017567/1‑48 (MQ=255) | GTCATGCTTGGTGATGCGGTAGTGGCGCAGAAATTTGCCCGTGAGCTGCAAAAAGAGGGCATTTACGTTACCGGTTTCTTCTATCCGGTCGTTCCGAAAGGTCAGGCGCGTATTCGTACCCAGATGTCTGCGGCG > Exported/2549911‑2550045 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |