| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 2,816,547 | C→A | 6.9% | P69T (CCG→ACG) | soxR → | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 2,816,547 | 0 | C | A | 6.9% | 449.2 / 9.6 | 130 | P69T (CCG→ACG) | soxR | DNA‑binding transcriptional dual regulator, Fe‑S center for redox‑sensing |
| Reads supporting (aligned to +/- strand): ref base C (56/65); new base A (7/2); total (63/67) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.90e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-01 | |||||||||||
Only 100 of 134 total aligned reads displayed.
TCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGA > Exported/2816477‑2816616 | tCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTc > 1:515911/1‑71 (MQ=255)tCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTc > 1:4184713/1‑71 (MQ=255) gcggcgATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGc < 1:3182895/71‑1 (MQ=255) gcggcgATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGc < 1:892457/71‑1 (MQ=255) cggcgATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCt < 1:1739344/71‑1 (MQ=255) cggcgATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCt < 1:3962990/71‑1 (MQ=255) gcgATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTgg > 1:993060/1‑71 (MQ=255) cgATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGGAATGCCAATACGCt < 1:2426283/68‑1 (MQ=37) cgATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGGAATGCCAATACGCt < 1:4290721/68‑1 (MQ=37) gATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCg < 1:3154233/71‑1 (MQ=255) atatAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGGAATGCCAATACGCTga > 1:1348754/1‑67 (MQ=37) atatAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGGAATGCCAATACGCTga > 1:3644334/1‑67 (MQ=37) atatAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGGAATGCCAATACGCTga > 1:770757/1‑67 (MQ=37) atatAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGGAATGCCAATACGCTga > 1:1699343/1‑67 (MQ=37) tataAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGAc < 1:30250/71‑1 (MQ=255) tataAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGAc < 1:1445250/71‑1 (MQ=255) ataAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGAc > 1:4199593/1‑70 (MQ=255) ataAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGAc > 1:2902641/1‑70 (MQ=255) taAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGAc < 1:1254989/69‑1 (MQ=255) taAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGAc < 1:3927895/69‑1 (MQ=255) taAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGAc < 1:2869539/69‑1 (MQ=255) taAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGAc < 1:188270/69‑1 (MQ=255) cGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTgg > 1:3490697/1‑71 (MQ=255) cGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTgg > 1:221581/1‑71 (MQ=255) cGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTgg < 1:1481678/71‑1 (MQ=255) tGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGAc < 1:3361642/63‑1 (MQ=255) tGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTg < 1:4675041/71‑1 (MQ=255) tGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTg < 1:4437178/71‑1 (MQ=255) tGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTg < 1:3111910/71‑1 (MQ=255) aTGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCa > 1:3431427/1‑63 (MQ=255) aTGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCa > 1:4597438/1‑63 (MQ=255) aTGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCa > 1:462443/1‑63 (MQ=255) tgtTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTgg > 1:2597219/1‑64 (MQ=255) tgtTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGc < 1:3570669/70‑1 (MQ=255) tgtTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGc < 1:3903629/70‑1 (MQ=255) tgtTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGc < 1:1096635/70‑1 (MQ=255) tgtTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCg < 1:4529665/71‑1 (MQ=255) ttGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGt < 1:2938746/70‑1 (MQ=255) gCGATATGTTGCAATTATCAAAGTTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGttt < 1:1674947/70‑1 (MQ=255) gCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGttt < 1:3247130/70‑1 (MQ=255) gCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGttt < 1:3718858/70‑1 (MQ=255) gCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGttt < 1:3793448/70‑1 (MQ=255) gCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTg > 1:2904828/1‑71 (MQ=255) gCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTg > 1:2437854/1‑71 (MQ=255) gATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCt < 1:2866789/46‑1 (MQ=255) gATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCt < 1:4285634/46‑1 (MQ=255) tatGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCgt < 1:1902572/71‑1 (MQ=255) atGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGc > 1:4180570/1‑42 (MQ=255) gTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGtt > 1:922133/1‑71 (MQ=255) gTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGtt > 1:1462798/1‑71 (MQ=255) ttGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTg < 1:3378946/71‑1 (MQ=255) tGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGaa > 1:2567705/1‑55 (MQ=255) tGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGaa > 1:571953/1‑55 (MQ=255) cAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCt < 1:3544557/37‑1 (MQ=255) aaTTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTgg < 1:3089782/60‑1 (MQ=255) aTTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGtt < 1:2952674/56‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCg < 1:2054037/53‑1 (MQ=255) ttATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGccc > 1:500093/1‑68 (MQ=255) aTCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGt > 1:2702532/1‑45 (MQ=255) aTCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGt > 1:333237/1‑45 (MQ=255) aTCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGttt > 1:3905425/1‑54 (MQ=255) aTCAAAATTGCTCAGCGAATTGGCATTCCGCTGGCGACCATTGGTGAAGCGtt > 1:3025554/1‑53 (MQ=255) tCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAgg < 1:4009570/70‑1 (MQ=255) aaaaTTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCa > 1:222650/1‑71 (MQ=255) aaaaTTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCa > 1:1431120/1‑71 (MQ=255) aaaaTTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCa > 1:2778356/1‑71 (MQ=255) aaaaTTGCTCAGCGTATTGGCATTCCGCTGGCGACCAATGGTGAAGc > 1:2256273/1‑47 (MQ=255) aaaTTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGt < 1:3309037/48‑1 (MQ=255) aTTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGttt > 1:2899979/1‑48 (MQ=255) aTTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGttt > 1:4046776/1‑48 (MQ=255) ttGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACg > 1:3274987/1‑71 (MQ=255) gCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGtt < 1:2036813/71‑1 (MQ=255) gCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGtt < 1:2843638/71‑1 (MQ=255) cTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGtt > 1:776002/1‑70 (MQ=255) cTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGt < 1:1315135/69‑1 (MQ=255) gTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGc > 1:4647424/1‑70 (MQ=255) tATTGGCATTCCGCTGGCGACCATTGGTGAAGCGt < 1:1253436/35‑1 (MQ=255) tATTGGCATTCCGCTGGCGACCATTGGTGAAGCGt < 1:913273/35‑1 (MQ=255) tATTGGCATTCCGCTGGCGACCATTGGTGAAGCGt < 1:3417716/35‑1 (MQ=255) ttGGCATTCCGCTGGCGACCATTGGTGAAGCGttt > 1:379828/1‑35 (MQ=255) ttGGCATTCCGCTGGCGACCATTGGTGAAGCGttt > 1:3286082/1‑35 (MQ=255) ttGGCATTCCGCTGGCGACCATTGGTGAAGCGttt > 1:2170362/1‑35 (MQ=255) ttGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGaaa < 1:1597260/71‑1 (MQ=255) ttGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGaaa < 1:1670615/71‑1 (MQ=255) ttGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGaaa < 1:2525628/71‑1 (MQ=255) ttGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGaaa < 1:4388410/71‑1 (MQ=255) ttGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGa > 1:2671933/1‑69 (MQ=255) ttGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGa > 1:1860263/1‑69 (MQ=255) ttGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGa > 1:9576/1‑69 (MQ=255) ttGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCACGAAGGGCATACGTTAAGTGCGa > 1:1538908/1‑69 (MQ=255) ttGGCATTCAGCTGGCGACCATTGGTGAAGCGttt > 1:3190322/1‑35 (MQ=255) tGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGa > 1:13506/1‑68 (MQ=255) ggCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAag < 1:1120032/70‑1 (MQ=255) ttCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCa < 1:1408655/49‑1 (MQ=255) ttCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCa < 1:1642824/49‑1 (MQ=255) tCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:2336376/41‑1 (MQ=255) tCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCg < 1:1026446/41‑1 (MQ=255) tCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTgg > 1:1206029/1‑70 (MQ=255) tCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTgg > 1:917002/1‑70 (MQ=255) ccGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGa > 1:3014764/1‑70 (MQ=255) | TCAGCGGCGATATAAACGTGATGTGTTGCGATATGTTGCAATTATCAAAATTGCTCAGCGTATTGGCATTCCGCTGGCGACCATTGGTGAAGCGTTTGGCGTGTTGCCCGAAGGGCATACGTTAAGTGCGAAAGAGTGGA > Exported/2816477‑2816616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |