| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 217,903 | A→G | 8.5% | S2S (AGT→AGC) | yafU ← | predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 217,903 | 0 | A | G | 8.5% | 206.6 / 8.3 | 70 | S2S (AGT→AGC) | yafU | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (19/45); new base G (3/3); total (22/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGGCTATAACTGCTTTGGCCACATCCATTGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCCACAGCAATCCGAAACCACTG > Exported/217836‑217973 | cGGCTATAACTGCTTTGGCCACATCCATTGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTc < 1:4502323/71‑1 (MQ=255) ggCTATAACTGCTTTGGCCACATCCATTGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCa < 1:1938761/71‑1 (MQ=255) tataACTGCTTTGGCCACATCCATCGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTc < 1:3817260/67‑1 (MQ=255) taACTGCTTTGGCCACATCCATTGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCataat < 1:1634210/70‑1 (MQ=255) taACTGCTTTGGCCACATCCATTGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCataat < 1:2817154/70‑1 (MQ=255) cTTTGGCCACATCCATTGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTc < 1:2241739/70‑1 (MQ=255) tGGCCACATCCATTGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTa < 1:873863/69‑1 (MQ=255) tGGCCACATCCATTGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTa < 1:1989103/69‑1 (MQ=255) tCCATTGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCa < 1:2148059/49‑1 (MQ=255) tCCATTGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTctgct < 1:3210212/71‑1 (MQ=255) tCCATTGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTctgc < 1:3420465/70‑1 (MQ=255) cATTGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCata > 1:2801384/1‑49 (MQ=255) ttGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCataat < 1:3508506/49‑1 (MQ=255) ttGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCataat < 1:2838617/49‑1 (MQ=255) ttGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCataat < 1:2145853/49‑1 (MQ=255) ttGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTc > 1:1795562/1‑63 (MQ=255) ttGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTc > 1:4109501/1‑63 (MQ=255) ttGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTc > 1:4269031/1‑63 (MQ=255) ttGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTc > 1:1022936/1‑63 (MQ=255) tGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTc > 1:954280/1‑62 (MQ=255) tGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGAtt > 1:2119080/1‑70 (MQ=255) gAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCAtaataa > 1:3630099/1‑49 (MQ=255) gAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCAtaataa > 1:3187885/1‑49 (MQ=255) gAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGAttt > 1:790356/1‑70 (MQ=255) gAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGAttt > 1:4722093/1‑70 (MQ=255) aaaaaTCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTaa < 1:3725578/71‑1 (MQ=255) aaaaaTCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTa < 1:2556906/70‑1 (MQ=255) aTCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCg > 1:4734730/1‑70 (MQ=255) tCGCCAAGAAAATTAACCAGATCTCGCTCTGAGCTCATAATAAATTCTa > 1:4246712/1‑49 (MQ=255) tCGCCAAGAAAATTAACCAGATCTCGCTCTGAGCTCATAATAAATTCTa > 1:1716179/1‑49 (MQ=255) tCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCt < 1:4163278/48‑1 (MQ=255) tCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCa < 1:3892677/71‑1 (MQ=255) tCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCa < 1:3409565/71‑1 (MQ=255) gCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCag < 1:2375737/70‑1 (MQ=255) gCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCag < 1:324417/70‑1 (MQ=255) ccAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCagag < 1:178353/71‑1 (MQ=255) ccAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCagag < 1:2429857/71‑1 (MQ=255) aaGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGaa < 1:2768644/71‑1 (MQ=255) aaGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGaa < 1:298933/71‑1 (MQ=255) aaaaTTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATg > 1:4071263/1‑43 (MQ=255) aTTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGc < 1:3928627/71‑1 (MQ=255) aTTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGc < 1:3891925/71‑1 (MQ=255) aCCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCcac < 1:3976307/70‑1 (MQ=255) aCCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCcac < 1:869333/70‑1 (MQ=255) aCCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCcac < 1:3022215/70‑1 (MQ=255) gATCTCGCTCTGAGCTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCCACAGCaa > 1:4423411/1‑71 (MQ=255) gATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCg < 1:1650124/50‑1 (MQ=255) gATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCCACAGCaa < 1:689928/71‑1 (MQ=255) aTCTCGCTCTGAGCTCATAATAAATTCTATGGTTctgct < 1:4746406/39‑1 (MQ=255) aTCTCGCTCTGAGCTCATAATAAATTCTATGGTTctgct < 1:588247/39‑1 (MQ=255) aTCTCGCTCTGAGCTCATAATAAATTCTATGGTTctgct < 1:4100523/39‑1 (MQ=255) aTCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCagag < 1:4076849/54‑1 (MQ=255) aTCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCagag < 1:2206816/54‑1 (MQ=255) aTCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCag < 1:482969/52‑1 (MQ=255) aTCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCCACAGCaa < 1:2362654/70‑1 (MQ=255) ctcGCTCTGAACTCATAATAAATTCTATGGTTctg < 1:1922497/35‑1 (MQ=255) ctcGCTCTGAACTCATAATAAATTCTATGGTTctg < 1:555218/35‑1 (MQ=255) gCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAAcc > 1:1468779/1‑43 (MQ=255) gCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAAc > 1:385278/1‑42 (MQ=255) ctGAACTCATAATAAATTCTATGGTTCTGCTGATTTaa > 1:393140/1‑38 (MQ=255) ctGAACTCATAATAAATTCTATGGTTCTGCTGATTTaa > 1:656978/1‑38 (MQ=255) ctGAACTCATAATAAATTCTATGGTTCTGCTGATTTaa > 1:3727446/1‑38 (MQ=255) tGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCagag < 1:395733/45‑1 (MQ=255) tGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCagag < 1:1805753/45‑1 (MQ=255) tGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCagag < 1:2422136/45‑1 (MQ=255) tGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCagag < 1:2641005/45‑1 (MQ=255) tGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCCACAGCAATCCGAAAc < 1:3571912/69‑1 (MQ=255) tGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCCACAGCAATCCGAAAc < 1:2346513/69‑1 (MQ=255) tGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCCACAGCAATCCGAAAc < 1:1200839/69‑1 (MQ=255) gAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCCACAGCAATCCGAAACCAc > 1:1951054/1‑71 (MQ=255) aaCTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCCACAGCAATCCGaaa > 1:2584510/1‑66 (MQ=255) aaCTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCCACAGCAATCCGAAACCACt > 1:3851588/1‑71 (MQ=255) aaCTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCCACAGCAATCCGAAACCACt > 1:401005/1‑71 (MQ=255) aCTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCCACAGCAATCCGAAACCACTg < 1:1679835/71‑1 (MQ=255) | CGGCTATAACTGCTTTGGCCACATCCATTGAAAAATCGCCAAGAAAATTAACCAGATCTCGCTCTGAACTCATAATAAATTCTATGGTTCTGCTGATTTAACCGCAGAGAAGTTCGCCACAGCAATCCGAAACCACTG > Exported/217836‑217973 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |