| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 530,638 | T→C | 12.4% | E105E (GAA→GAG) | ybhP ← | predicted DNase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 530,638 | 0 | T | C | 12.4% | 338.0 / 31.5 | 121 | E105E (GAA→GAG) | ybhP | predicted DNase |
| Reads supporting (aligned to +/- strand): ref base T (61/45); new base C (5/10); total (66/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.91e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 128 total aligned reads displayed.
CACAATGCGGCAGTAGAGCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACGGCATTGCGACCGTAGG > Exported/530569‑530708 | cacaATGCGGCAGTAGAGCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGtt > 1:2680/1‑71 (MQ=255)cacaATGCGGCAGTAGAGCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGtt > 1:2288206/1‑71 (MQ=255)cacaATGCGGCAGTAGAGCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGtt > 1:3808377/1‑71 (MQ=255)cacaATGCGGCAGTAGAGCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGtt > 1:4642264/1‑71 (MQ=255)cacaATGCGGCAGTAGAGCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGt > 1:2047693/1‑70 (MQ=255)cacaATGCGGCAGTAGAGCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGt > 1:1489003/1‑70 (MQ=255) tGCGGCAGTAGAGCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATg > 1:1071010/1‑71 (MQ=255) tGCGGCAGTAGAGCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATg > 1:2762485/1‑71 (MQ=255) tGCGGCAGTAGAGCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATg > 1:121577/1‑71 (MQ=255) gTAGAGCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTc < 1:4051426/60‑1 (MQ=255) gTAGAGCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTc < 1:4046842/60‑1 (MQ=255) gTAGAGCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTc < 1:1333924/60‑1 (MQ=255) agagCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTc < 1:758100/58‑1 (MQ=255) agagCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAAcgc > 1:464034/1‑71 (MQ=255) agagCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAAcgc > 1:308397/1‑71 (MQ=255) agagCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAAcg > 1:3273768/1‑70 (MQ=255) gagCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAAcgc > 1:720250/1‑70 (MQ=255) gagCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAAcgc > 1:2202254/1‑70 (MQ=255) cACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGCTCAATGGGATAACGCGa > 1:2099462/1‑69 (MQ=255) cgcgCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTc < 1:516098/49‑1 (MQ=255) cgcgCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTc < 1:4093698/49‑1 (MQ=255) cgcgCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTc < 1:2327550/49‑1 (MQ=255) gcgcTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTc < 1:1342589/48‑1 (MQ=255) cgcTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACgg > 1:1209102/1‑70 (MQ=255) cTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGt > 1:3473102/1‑71 (MQ=255) cTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGt > 1:2120526/1‑71 (MQ=255) cTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGt > 1:2716294/1‑71 (MQ=255) cTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGCTCAATGGGATAACGCGACAGTACGGCGt > 1:1726620/1‑71 (MQ=255) cTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGCTCAATGGGATAACGCGACAGTACGGCGt > 1:4640894/1‑71 (MQ=255) ttttCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTc < 1:3205283/44‑1 (MQ=255) tttCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTg > 1:596530/1‑71 (MQ=255) ttCCGCACCATCGACCGAAACATCTCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGc > 1:4426215/1‑71 (MQ=255) ttCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCaa > 1:1921116/1‑44 (MQ=255) ttCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTg < 1:4234911/70‑1 (MQ=255) ccGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGcc < 1:4523370/70‑1 (MQ=255) cGCACCATCGACCGAAACATCGTGATTCTCATAATGTTCa > 1:2578036/1‑40 (MQ=255) cGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCa > 1:1300167/1‑40 (MQ=255) cGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCa > 1:1994472/1‑40 (MQ=255) cGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCa > 1:3892047/1‑40 (MQ=255) cGCACCATCGACCGAAACATCGCGATTCTCATAATGCTCAATGGGATAACGCGACAGTACGGCGTTGCCGt < 1:262083/71‑1 (MQ=255) gCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTg < 1:4233612/71‑1 (MQ=255) cACCATCGACCGAAACATCGCGATTCTCATAATGTTCaa < 1:373459/39‑1 (MQ=255) cACCATCGACCGAAACATCGCGATTCTCATAATGTTCaa < 1:906358/39‑1 (MQ=255) cACCATCGACCGAAACATCGCGATTCTCATAATGTTCaa < 1:1697487/39‑1 (MQ=255) cACCATCGACCGAAACATCGCGATTCTCATAATGTTCaa < 1:1859826/39‑1 (MQ=255) cACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGa < 1:2569650/71‑1 (MQ=255) aCCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGa < 1:436567/70‑1 (MQ=255) aCCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGAt < 1:900177/71‑1 (MQ=255) tCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGAt < 1:901358/40‑1 (MQ=255) gACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAGCGCGACAGTa > 1:4132/1‑50 (MQ=255) gACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAGCGCGACAGTa > 1:3704946/1‑50 (MQ=255) gACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCtt > 1:2893975/1‑71 (MQ=255) gACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCtt > 1:1632400/1‑71 (MQ=255) gACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCtt > 1:1788253/1‑71 (MQ=255) gACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCt < 1:2956032/70‑1 (MQ=255) ccGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTcc < 1:1112637/71‑1 (MQ=255) ccGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTcc < 1:4386284/71‑1 (MQ=255) ccGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTcc < 1:4332034/71‑1 (MQ=255) cGAAACATCGCGATTCTCATAATGTTCAATGGGATaa < 1:1538922/37‑1 (MQ=255) cGAAACATCGCGATTCTCATAATGTTCAATGGGATaa < 1:3660197/37‑1 (MQ=255) cGAAACATCGCGATTCTCATAATGTTCAATGGGATaa < 1:4527591/37‑1 (MQ=255) cGAAACATCGCGATTCTCATAATGCTCAATGGGATAACGCGACAGTACGGCGTTGCCGt < 1:2128455/59‑1 (MQ=255) cGAAACATCGCGATTCTCATAATGCTCAATGGGATAACGCGACAGTACGGCGTTGCCGt < 1:4652672/59‑1 (MQ=255) cGAAACATCGCGATTCTCATAATGCTCAATGGGATAACGCGACAGTACGGCGTTGCCGt < 1:1132164/59‑1 (MQ=255) cGAAACATCGCGATTCTCATAATGCTCAATGGGATAACGCGACAGTACGGCGTAGCCGt < 1:1616320/59‑1 (MQ=255) aCATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGa > 1:4148230/1‑57 (MQ=255) aCATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGa > 1:3730584/1‑57 (MQ=255) aCATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGa > 1:1116012/1‑57 (MQ=255) aCATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGta > 1:1916191/1‑71 (MQ=255) aTCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATTCCCTTCCGGGtata > 1:1371295/1‑71 (MQ=255) aTCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGtata > 1:3025360/1‑71 (MQ=255) gcgATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGc > 1:3385580/1‑42 (MQ=255) gcgATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACgg < 1:3170386/71‑1 (MQ=255) cgATTCTCATAATGCTCAATGGGATAACGCGACAGTACGGCGTTGCCGt < 1:2057922/49‑1 (MQ=255) aTTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACGGCAt < 1:1498631/71‑1 (MQ=255) aTTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACGGCAt > 1:1644194/1‑71 (MQ=255) ttCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGta < 1:4313767/62‑1 (MQ=255) ctcATAATGTTCAATGGGATAACGCGACAGTACGGc > 1:3860004/1‑36 (MQ=255) ctcATAATGTTCAATGGGATAACGCGACAGTACGGc > 1:4393703/1‑36 (MQ=255) cATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACGGCATTGCGa > 1:3106848/1‑71 (MQ=255) cATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACGGCATTGCGa > 1:4738568/1‑71 (MQ=255) aTAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGt < 1:2455904/41‑1 (MQ=255) aTAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGa > 1:2344204/1‑43 (MQ=255) aTAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGa > 1:3553254/1‑43 (MQ=255) aTAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACGGCa > 1:3317952/1‑64 (MQ=255) aTAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACGGCa > 1:4632077/1‑64 (MQ=255) aTAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACGGCATTGc < 1:4752541/68‑1 (MQ=255) aTAATGCTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGtat < 1:3470887/58‑1 (MQ=255) tAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACGGCATTGCGAcc > 1:2166938/1‑71 (MQ=255) aTGTTCAATGGGATAACGCGACAGTACGGCGTTGCCg < 1:396069/37‑1 (MQ=255) aTGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTTATGCCCTTCCGGGTATACGGCATTGCGACCGt < 1:3274249/71‑1 (MQ=255) aTGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACGGCATTGCGACCg > 1:1515872/1‑70 (MQ=255) aTGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACGGCATTGCGACCg > 1:4572359/1‑70 (MQ=255) aTGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACGGCATTGCGACCGt < 1:2416798/71‑1 (MQ=255) aTGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACGGCATTGCGACCGt < 1:3969877/71‑1 (MQ=255) gTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTg > 1:2392775/1‑37 (MQ=255) gTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTg > 1:1298886/1‑37 (MQ=255) gTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTg > 1:2542553/1‑37 (MQ=255) gTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTg > 1:2704612/1‑37 (MQ=255) ttCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACGGCATTGCGACCGTAgg > 1:1976466/1‑71 (MQ=255) | CACAATGCGGCAGTAGAGCACGCCGCGCTTTTCCGCACCATCGACCGAAACATCGCGATTCTCATAATGTTCAATGGGATAACGCGACAGTACGGCGTTGCCGTGATGCCCTTCCGGGTATACGGCATTGCGACCGTAGG > Exported/530569‑530708 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |