| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 746,106 | G→A | 11.7% | G256D (GGC→GAC) | ndh → | respiratory NADH dehydrogenase 2/cupric reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 746,106 | 0 | G | A | 11.7% | 221.2 / 16.5 | 77 | G256D (GGC→GAC) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| Reads supporting (aligned to +/- strand): ref base G (31/37); new base A (4/5); total (35/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.46e-01 | |||||||||||
ACGAGCTAACGAAACTTGGCGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGCCGGGATCAAAGCGCCA > Exported/746040‑746176 | aCGAGCTAACGAAACTTGGCGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTg > 1:3028901/1‑71 (MQ=255)aCGAGCTAACGAAACTTGGCGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTg > 1:2257119/1‑71 (MQ=255)aCGAGCTAACGAAACTTGGCGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTg < 1:4238580/71‑1 (MQ=255) cGAGCTAACGAAACTTGGCGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTg > 1:42301/1‑70 (MQ=255) aaCGAAACTTGGCGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACt > 1:584550/1‑70 (MQ=255) aCGAAACTTGGCGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGca > 1:949320/1‑65 (MQ=255) aCGAAACTTGGCGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGca > 1:1763991/1‑65 (MQ=255) cTTGGCGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATgg > 1:3303723/1‑71 (MQ=255) cTTGGCGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATgg > 1:1541667/1‑71 (MQ=255) cTTGGCGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATgg > 1:4507277/1‑71 (MQ=255) ggCGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCg > 1:1716758/1‑70 (MQ=255) gCGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGaa < 1:7056/71‑1 (MQ=255) cGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAat < 1:2742439/71‑1 (MQ=255) cGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAat < 1:3910638/71‑1 (MQ=255) gTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTg < 1:1882489/51‑1 (MQ=255) gTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAata < 1:2087906/71‑1 (MQ=255) tCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGca > 1:105520/1‑51 (MQ=255) tCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGca > 1:3630217/1‑51 (MQ=255) tCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGca > 1:1766066/1‑51 (MQ=255) tCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGca > 1:940543/1‑51 (MQ=255) cgcgTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAatatat < 1:4068425/71‑1 (MQ=255) gcgTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAatatat < 1:3725597/70‑1 (MQ=255) gcgTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAatatat < 1:1253692/70‑1 (MQ=255) gcgTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATAtt < 1:2440331/71‑1 (MQ=255) gcgTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATAtt < 1:2223421/71‑1 (MQ=255) gcgTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATAtt < 1:3531489/71‑1 (MQ=255) gcgTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATAtt < 1:1147171/71‑1 (MQ=255) gcgTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATAtt < 1:3473920/71‑1 (MQ=255) cgTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATAtt < 1:388469/70‑1 (MQ=255) cgTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATAtt < 1:1730676/70‑1 (MQ=255) tGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGACCTGCACACTAAAGATGGCGaa < 1:4105490/62‑1 (MQ=255) tGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGACCTGCACACTAAAGATGGCGaa < 1:3601059/62‑1 (MQ=255) tGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGACCTGCACACTAAAGATGGCGaa < 1:3472129/62‑1 (MQ=255) tGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGACCTGCACACTAAAGATGGCGaa < 1:966116/62‑1 (MQ=255) tGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGACCTGCACACTAAAGATGGCGaa < 1:2265047/62‑1 (MQ=255) gCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAgg > 1:2002504/1‑71 (MQ=255) cTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGACCTGCACACTAAAGATGGCGAata > 1:145571/1‑62 (MQ=255) cTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGACCTGCACACTAAAGATGGCGAata > 1:3890391/1‑62 (MQ=255) cTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGACCTGCACACTAAAGATGGCGAata > 1:1879887/1‑62 (MQ=255) cTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGACCTGCACACTAAAGATGGCGAata > 1:4718445/1‑62 (MQ=255) aCGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGctga > 1:2529127/1‑71 (MQ=255) aCGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGctga > 1:2313142/1‑71 (MQ=255) aaaCCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGctgat > 1:519230/1‑68 (MQ=255) aaaCCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGctgat > 1:762046/1‑68 (MQ=255) aaaCCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGctgat > 1:84740/1‑68 (MQ=255) aaaCCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGctgat > 1:2402417/1‑68 (MQ=255) aaCCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAata < 1:3801824/54‑1 (MQ=255) ccATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATg > 1:572892/1‑71 (MQ=255) gTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTAt < 1:3488141/70‑1 (MQ=255) aCCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTCATCTGATGGTATggg > 1:1593430/1‑70 (MQ=255) aGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGc > 1:1105070/1‑71 (MQ=255) aGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGc > 1:2867301/1‑71 (MQ=255) gTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAatata > 1:3302406/1‑42 (MQ=255) gTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAatata > 1:1642316/1‑42 (MQ=255) gTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGcc > 1:2198996/1‑71 (MQ=255) tGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGctgatctga < 1:4256281/56‑1 (MQ=255) cTGATGAAGGCGGCCTGCACACTAAAGATGGCGaa < 1:3983276/35‑1 (MQ=255) cTGATGAAGGCGGCCTGCACACTAAAGATGGCGaa < 1:3313641/35‑1 (MQ=255) cTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGCCggg < 1:391030/71‑1 (MQ=255) cTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGCCggg < 1:3872466/71‑1 (MQ=255) cTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGCCggg < 1:3058317/71‑1 (MQ=255) cTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGCCggg < 1:4511453/71‑1 (MQ=255) cTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGCCgg > 1:506444/1‑70 (MQ=255) tgatgaAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGCCggg < 1:3877835/70‑1 (MQ=255) atgaAGGCGGCCTGCACACTAAAGATGGCGAATATAtt < 1:4302232/38‑1 (MQ=255) atgaAGGCGGCCTGCACACTAAAGATGGCGAATATAtt < 1:2958899/38‑1 (MQ=255) atgaAGGCGGCCTGCACACTAAAGATGGCGAATATAtt < 1:596181/38‑1 (MQ=255) atgaAGGCGGCCTGCACACTAAAGATGGCGAATATATTGa > 1:377751/1‑40 (MQ=255) tgaAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGCCGGGATCa < 1:3862930/71‑1 (MQ=255) aaGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGCCGGGATCaa < 1:1267603/70‑1 (MQ=255) aaGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGGATGGGCAGCCGGGATCaaa < 1:4066338/71‑1 (MQ=255) aGGCGGCCTGCACACTAAAGATGGCGAATATATTg < 1:168431/35‑1 (MQ=255) aGGCGGCCTGCACACTAAAGATGGCGAATATATTg < 1:253556/35‑1 (MQ=255) aGGCGGCCTGCACACTAAAGATGGCGAATATATTg < 1:3670254/35‑1 (MQ=255) aGGCGGCCTGCACACTAAAGATGGCGAATATATTg < 1:3463334/35‑1 (MQ=255) aGGCGGCCTGCACACTAAAGATGGCGAATATATTg < 1:3882824/35‑1 (MQ=255) aGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTAt > 1:3300930/1‑53 (MQ=255) ggcCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGCCGGGATCAAAgcgc > 1:4233276/1‑70 (MQ=255) gcCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGCCGGGATCAAAGCGCCa < 1:4432911/71‑1 (MQ=255) gcCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGCCGGGATCAAAGCGCCa < 1:4436794/71‑1 (MQ=255) | ACGAGCTAACGAAACTTGGCGTTCGCGTGCTGACGCAAACCATGGTCACCAGTGCTGATGAAGGCGGCCTGCACACTAAAGATGGCGAATATATTGAGGCTGATCTGATGGTATGGGCAGCCGGGATCAAAGCGCCA > Exported/746040‑746176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |