| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 762,795 | C→T | 9.1% | V27V (GTG→GTA) | potC ← | polyamine transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 762,795 | 0 | C | T | 9.1% | 304.9 / 16.7 | 99 | V27V (GTG→GTA) | potC | polyamine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (51/39); new base T (7/2); total (58/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.30e-01 | |||||||||||
AGCAGGCTATACCATTTGGTGGTAAAGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATAAAACCGCCGCGAAGCAG > Exported/762727‑762863 | agcatGCTATACCATTTGGTGGTAAAGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTca < 1:1748578/70‑1 (MQ=255) cTATACCATTTGGTGGTAAAGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCaa < 1:2874186/71‑1 (MQ=255) tataCCATTTGGTGGTAAAGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCaa > 1:586516/1‑70 (MQ=255) taCCATTTGGTGGTAAAGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCaaaa > 1:2606598/1‑70 (MQ=255) ccATTTGGTGGTAAAGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAaataa > 1:4082702/1‑71 (MQ=255) ccATTTGGTGGTAAAGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAaataa > 1:2830109/1‑71 (MQ=255) cATTTGGTGGTAAAGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAaataat < 1:1467423/71‑1 (MQ=255) tggtggTAAAGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGAtt > 1:2474598/1‑71 (MQ=255) tAAAGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGata < 1:2105406/71‑1 (MQ=255) tAAAGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGCAGTTCACAATCAAAATAATGATTGGGata < 1:293023/71‑1 (MQ=255) aaaGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGata > 1:4019785/1‑70 (MQ=255) aaGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAaataat < 1:3572691/59‑1 (MQ=255) aaGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAaataat < 1:1579368/59‑1 (MQ=255) aaGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAaataat < 1:1545221/59‑1 (MQ=255) aaGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGAtata < 1:3277429/71‑1 (MQ=255) aGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTTACAATCAAAATAATGa < 1:4544012/60‑1 (MQ=255) aGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGAtata > 1:417652/1‑70 (MQ=255) aGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATAc < 1:3623284/71‑1 (MQ=255) aGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATAc < 1:101720/71‑1 (MQ=255) gCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTTACAATCAAAATAATGa < 1:3527924/59‑1 (MQ=255) gCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGa > 1:1069930/1‑59 (MQ=255) gCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGa > 1:2407310/1‑59 (MQ=255) gCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGa > 1:193122/1‑59 (MQ=255) gCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGAtata > 1:441430/1‑69 (MQ=255) cccTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTTACAATCAAAATAATGAtt > 1:3266825/1‑60 (MQ=255) cccTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTTACAATCAAAATAATGAtt > 1:2106290/1‑60 (MQ=255) cccTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTTACAATCAAAATAATGAtt > 1:3273276/1‑60 (MQ=255) cccTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTTACAATCAAAATAATGAtt > 1:1469655/1‑60 (MQ=255) cccTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTTACAATCAAAATAATGAtt > 1:3278885/1‑60 (MQ=255) cccTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTTACAATCAAAATAATGAtt > 1:4229333/1‑60 (MQ=255) cccTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTTACAATCAAAATAATGAtt > 1:1807349/1‑60 (MQ=255) cccTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAg < 1:739469/71‑1 (MQ=255) ccTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAg < 1:1636586/70‑1 (MQ=255) cTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAgg > 1:2813591/1‑70 (MQ=255) tGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCaa < 1:2257971/47‑1 (MQ=255) tGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCaa < 1:2702648/47‑1 (MQ=255) ccAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCaaaa > 1:511930/1‑47 (MQ=255) ccAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCaaaa > 1:2046052/1‑47 (MQ=255) ccAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCaaaa > 1:1559330/1‑47 (MQ=255) cAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTAcgc > 1:765038/1‑71 (MQ=255) gTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACaa > 1:4261280/1‑38 (MQ=255) gTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACaa > 1:1709373/1‑38 (MQ=255) gTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACaa > 1:2567612/1‑38 (MQ=255) gTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACaa > 1:2269955/1‑38 (MQ=255) gTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACaa > 1:2622481/1‑38 (MQ=255) gTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTAcgcg > 1:1427202/1‑70 (MQ=255) ttGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTa < 1:3422603/71‑1 (MQ=255) gATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGata > 1:223274/1‑55 (MQ=255) gATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGata > 1:1157360/1‑55 (MQ=255) gATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGata > 1:2485627/1‑55 (MQ=255) gATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGata > 1:2035314/1‑55 (MQ=255) gATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGata > 1:2452666/1‑55 (MQ=255) gATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTAcgcg > 1:927416/1‑67 (MQ=255) gATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTAcgcg > 1:154532/1‑67 (MQ=255) gATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTAcgcg > 1:921731/1‑67 (MQ=255) gATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTAcgcg > 1:667999/1‑67 (MQ=255) gATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTAcgcg > 1:4190670/1‑67 (MQ=255) gATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTAagcg > 1:2383706/1‑67 (MQ=255) aTGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGa < 1:2842710/70‑1 (MQ=255) cctaaGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAg < 1:3199937/67‑1 (MQ=255) ccAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATg < 1:1558229/42‑1 (MQ=255) ccAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAg < 1:994087/70‑1 (MQ=255) ccAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAg < 1:2431570/70‑1 (MQ=255) ccAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAg < 1:2704427/70‑1 (MQ=255) ccAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGc > 1:801183/1‑71 (MQ=255) aaaGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATAc > 1:3441860/1‑52 (MQ=255) aaaGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCgg > 1:2154211/1‑71 (MQ=255) aaaGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCgg > 1:1188913/1‑71 (MQ=255) aaaGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCgg > 1:3253294/1‑71 (MQ=255) aaaGAGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATAc > 1:271887/1‑52 (MQ=255) aGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGt > 1:2868942/1‑70 (MQ=255) gcgcGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCa < 1:4039162/71‑1 (MQ=255) gcgAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATa < 1:1133853/71‑1 (MQ=255) cgAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATaa < 1:1409482/71‑1 (MQ=255) cgAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATaa < 1:261365/71‑1 (MQ=255) gAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATaaa < 1:1089533/71‑1 (MQ=255) gAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATaaa < 1:404433/71‑1 (MQ=255) gAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATaa > 1:2330720/1‑70 (MQ=255) gAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATaa > 1:654617/1‑70 (MQ=255) aGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATaaaa > 1:4549972/1‑71 (MQ=255) tGTTAAAGGAGTTCACAATCAAAATAATGATTggg > 1:4091279/1‑35 (MQ=255) tGTTAAAGGAGTTCACAATCAAAATAATGATTggg > 1:396635/1‑35 (MQ=255) tGTTAAAGGAGTTCACAATCAAAATAATGATTggg > 1:3610113/1‑35 (MQ=255) gTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATAc < 1:2349604/40‑1 (MQ=255) gTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATAAAAccgc > 1:1384583/1‑71 (MQ=255) ttAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTa < 1:3213079/50‑1 (MQ=255) ttAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTa < 1:3075359/50‑1 (MQ=255) ttAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTa < 1:4346379/50‑1 (MQ=255) ttAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTa < 1:461898/50‑1 (MQ=255) ttAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTa < 1:4341232/50‑1 (MQ=255) ttAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATa < 1:559728/63‑1 (MQ=255) ttAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATa < 1:3264547/63‑1 (MQ=255) tAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATAAAAccgccg > 1:4626869/1‑71 (MQ=255) aaaGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATAAAACcgccgc > 1:1214320/1‑71 (MQ=255) aaaGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATAAAACcgccgc > 1:4009094/1‑71 (MQ=255) aGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATAAAACCGCCGCGa < 1:4380232/71‑1 (MQ=255) gTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATAAAACCGCCGCGAAg > 1:3936298/1‑69 (MQ=255) ttCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATAAAACCGCCGCGAAGCAg < 1:53445/71‑1 (MQ=255) ttCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATAAAACCGCCGCGAAGCAg < 1:3676881/71‑1 (MQ=255) ttCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATAAAACCGCCGCGAAGCAg < 1:2768794/71‑1 (MQ=255) | AGCAGGCTATACCATTTGGTGGTAAAGCCCTGCCAGTTGATGCCAAAGCGCGAGCTGTTAAAGGAGTTCACAATCAAAATAATGATTGGGATATACAGGTACGCGTAGATAGCGGTCATAAAACCGCCGCGAAGCAG > Exported/762727‑762863 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |