| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,219,094 | C→T | 18.0% | A119A (GCG→GCA) | proQ ← | predicted structural transport element |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,219,094 | 0 | C | T | 18.0% | 168.6 / 30.2 | 72 | A119A (GCG→GCA) | proQ | predicted structural transport element |
| Reads supporting (aligned to +/- strand): ref base C (24/35); new base T (8/5); total (32/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.58e-01 | |||||||||||
TGGCTTGCGTTCGCGGCGCGGTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAGCTGCTTGCGAGCATGCT > Exported/1219028‑1219161 | tGGCTTGCGTTCGCGGCGCGGTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCtt < 1:1463841/71‑1 (MQ=255) gCTTGCGTTCGCGGCGCGGTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTg < 1:2536250/70‑1 (MQ=255) cTTGCGTTCGCGGCGCGGTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCt < 1:3299267/71‑1 (MQ=255) tGCGTTCGCGGCGCGGTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGt > 1:1069713/1‑71 (MQ=255) gCGTTCGCTGCGCGGTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTg < 1:2105488/69‑1 (MQ=255) cGTTCGCGGCGCGGTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTTGCTTGCTg < 1:4059635/68‑1 (MQ=255) cGTTCGCGGCGCGGTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTc < 1:570297/71‑1 (MQ=255) ttCGCGGCGCGGTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGc < 1:905720/60‑1 (MQ=255) ttCGCGGCGCGGTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGc < 1:2251052/60‑1 (MQ=255) ttCGCGGCGCGGTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGc < 1:1965824/60‑1 (MQ=255) ttCGCGGCGCGGTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAg < 1:2116182/71‑1 (MQ=255) cgcggcgcggTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTTGCTTGCTGTTCAGCa > 1:4193827/1‑71 (MQ=255) cggcgcggTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACg < 1:2775271/71‑1 (MQ=255) ggcgcggTGAGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGc < 1:683812/71‑1 (MQ=255) cgcggTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGc < 1:3043265/69‑1 (MQ=255) cGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGcccg < 1:2504526/70‑3 (MQ=255) cGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTg < 1:423596/70‑1 (MQ=255) cGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGa < 1:709351/71‑1 (MQ=255) cGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGa < 1:2632278/71‑1 (MQ=255) tcttctTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCt < 1:2090807/67‑1 (MQ=255) ttctttctCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCg > 1:1032223/1‑41 (MQ=255) ttctttctCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGc > 1:1707973/1‑42 (MQ=255) ttctttctCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGc > 1:821624/1‑42 (MQ=255) ttctttctCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGt < 1:4047723/49‑1 (MQ=255) ttctttctCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGt < 1:489527/49‑1 (MQ=255) ttctttctCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGt < 1:2884302/49‑1 (MQ=255) ttctttctCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGt < 1:1060977/49‑1 (MQ=255) ttctttctCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGt < 1:1206539/49‑1 (MQ=255) ttctttctCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCtgtg > 1:1709335/1‑62 (MQ=255) tctttctCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAacac > 1:286003/1‑70 (MQ=255) tctttctCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAacac > 1:400522/1‑70 (MQ=255) tctttctCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAacac > 1:3001366/1‑70 (MQ=255) ctttctCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTTGCTTGCTGTTCAGCACGCTGTGCCTGAaca < 1:1878241/68‑1 (MQ=255) tttctCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGc > 1:3904790/1‑60 (MQ=255) tttctCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGc > 1:3899146/1‑60 (MQ=255) ctcACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCtt > 1:599654/1‑71 (MQ=255) ctcACCAGCAGTTGCGGCAGCTTCGCGGTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAac > 1:2515596/1‑63 (MQ=255) tcACCAGCAGTTGCGGCAGCTTCGCGTTTTTTTGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCttt > 1:3062350/1‑71 (MQ=255) tcACCAGCAGTTGCGGCAGCTTCGCGTTTTTTTGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCttt > 1:891864/1‑71 (MQ=255) tcACCAGCAGTTGCGGCAGCTTCGCGTTTTTTTGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCttt > 1:3360532/1‑71 (MQ=255) tcACCAGCAGTTGCGGCAGCTTCGCGTTTTTTTGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCttt > 1:2953026/1‑71 (MQ=255) aCCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCtt < 1:3018726/68‑1 (MQ=255) aCCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCg > 1:1503447/1‑71 (MQ=255) cagTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCa > 1:2091568/1‑41 (MQ=255) cagTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCa > 1:3299539/1‑41 (MQ=255) cagTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGcttct < 1:2464930/71‑1 (MQ=255) agTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGcttct < 1:106684/70‑1 (MQ=255) gTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCttcttc < 1:4749778/71‑1 (MQ=255) gTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCttcttc < 1:4445302/71‑1 (MQ=255) gTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCttcttc < 1:4386971/71‑1 (MQ=255) tGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGGCTGAACACGCGCTTTCGCttcttc > 1:2176320/1‑69 (MQ=255) gCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAg > 1:3035775/1‑71 (MQ=255) gCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAg > 1:4359204/1‑71 (MQ=255) cGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGcttct < 1:3356375/65‑1 (MQ=255) gCAGCTTCGCGTTTTTTTGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAgctg < 1:1917520/71‑1 (MQ=255) gCAGCTTCGCGTTTTTTTGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAgctg < 1:3694904/71‑1 (MQ=255) gCAGCTTCGCGTTTTTTTGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAgctg < 1:554608/71‑1 (MQ=255) aGCTTCGCGTTTTTTTGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAgctgct > 1:2220386/1‑71 (MQ=255) aGCTTCGCGTTTTTTTGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAgctgct > 1:2402886/1‑71 (MQ=255) cTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAGCTGGTTg < 1:1258576/71‑1 (MQ=255) ttCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAGCTGCTTGc > 1:1963553/1‑71 (MQ=255) ttCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAGCTGCTTGc > 1:876354/1‑71 (MQ=255) cgcgTTTTTTTGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAGCTGCTTGc > 1:585299/1‑69 (MQ=255) cgcgTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAGCTGCTTGc < 1:3785011/69‑1 (MQ=255) gcgTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAGCTGCTTGCGAg < 1:1519492/71‑1 (MQ=255) gcgTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAGCTGCTTGCGAg < 1:693004/71‑1 (MQ=255) tttttCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAGCTGCTTGCGAGCAt > 1:1538461/1‑70 (MQ=255) ttttCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAGCTGCTTGCGAGCATg < 1:389550/70‑1 (MQ=255) tttCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAGCTGCTTGCGAGCATgat > 1:216944/1‑69 (MQ=255) tttCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAGCTGCTTGCGAGCATGct > 1:4088548/1‑71 (MQ=255) tttCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAGCTGCTTGCGAGCATGc < 1:1451744/70‑1 (MQ=255) tCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAGCTGCTTGCGAGCATGct > 1:3671766/1‑69 (MQ=255) | TGGCTTGCGTTCGCGGCGCGGTGCGTCTTCTTTCTCACCAGCAGTTGCGGCAGCTTCGCGTTTTTTCGCTTGCTGTTCAGCACGCTGTGCCTGAACACGCGCTTTCGCTTCTTCAAGCTGCTTGCGAGCATGCT > Exported/1219028‑1219161 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |