| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 688,346:1 | +T | 8.5% | noncoding (66/88 nt) | serT ← | tRNA‑Ser |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 688,346 | 1 | . | T | 8.5% | 179.9 / 13.9 | 47 | noncoding (66/88 nt) | serT | tRNA‑Ser |
| Reads supporting (aligned to +/- strand): ref base . (21/22); new base T (2/2); total (23/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 | |||||||||||
CAGGCAAAAGAAAAAGGGGTTAGCATTTAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCGGTGCCTTCAACCGCTCGGCCACACTTCCGGA > Exported/688276‑688414 | cAGGCAAAAGAAAAAGGGGTTAGCATTTAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGaa > 1:531891/1‑71 (MQ=255) aGGCAAAAGAAAAAGGGGTTAGCATTTAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑c > 1:2454245/1‑71 (MQ=255) aaaGAAAAAGGGGTTAGCATTTAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTgg < 1:484431/71‑1 (MQ=255) aaaGAAAAAGGGGTTAGCATTTAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTg > 1:946803/1‑70 (MQ=255) aaaGAAAAAGGGGTTAGCATTTAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTg > 1:2150932/1‑70 (MQ=255) aGAAAAAGGGGTTAGCATTTAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTgg > 1:1102641/1‑69 (MQ=255) ggggTTAGCATTTAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTc > 1:1936522/1‑71 (MQ=255) ggTTAGCATTTAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAG‑TTCGAATCTCTgc < 1:3539728/60‑2 (MQ=38) ggTTAGCATTTAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAG‑TTCGAATCTCTgc < 1:1994970/60‑2 (MQ=38) ttAGCATTTAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGt > 1:2961282/1‑71 (MQ=255) tAGCATTTAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTc > 1:27671/1‑71 (MQ=255) aGCATTTAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCg > 1:2652150/1‑71 (MQ=255) aTTTAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCttt < 1:1490700/61‑1 (MQ=255) tttAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCgg < 1:954192/71‑1 (MQ=255) tttAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCgg < 1:2204134/71‑1 (MQ=255) ttAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCggg > 1:2514759/1‑63 (MQ=255) tAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGtt > 1:434044/1‑71 (MQ=255) tAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGt < 1:743396/70‑1 (MQ=255) aGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAAccc < 1:1452983/54‑1 (MQ=255) gCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGtttt < 1:1472074/71‑1 (MQ=255) cTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCtt > 1:28239/1‑54 (MQ=255) cTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTc < 1:2978651/71‑1 (MQ=255) tAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGtt < 1:3006430/67‑1 (MQ=255) ccTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTc < 1:1608549/55‑1 (MQ=255) ccTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTc < 1:2911987/55‑1 (MQ=255) cttatcttatTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCg > 1:1973553/1‑71 (MQ=255) cttatcttatTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCg < 1:479776/71‑1 (MQ=255) cttatcttatTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCg > 1:427594/1‑71 (MQ=255) cttatcttatTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCg > 1:2851936/1‑71 (MQ=255) ttatcttatTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCg > 1:283473/1‑70 (MQ=255) ttatcttatTTGGCGGAAGCGCAGAG‑TTCGAATCTCTgc > 1:922208/1‑38 (MQ=18) ttatcttatTTGGCGGAAGCGCAGAG‑TTCGAATCTCTgc > 1:746243/1‑38 (MQ=18) atcttatTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTc < 1:1722859/51‑1 (MQ=255) atcttatTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCaa > 1:1112578/1‑63 (MQ=255) atcttatTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCaa > 1:2431333/1‑63 (MQ=255) atcttatTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCa > 1:1862950/1‑62 (MQ=255) cttatTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCttt < 1:2881375/43‑1 (MQ=255) cttatTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCttt < 1:1001678/43‑1 (MQ=255) tttGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCGGTGCCTTc > 1:901062/1‑70 (MQ=255) tttGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCGGTGCCTTCa < 1:487178/71‑1 (MQ=255) ggAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCGGTGCCTTCAACCGCt < 1:3127910/71‑1 (MQ=255) cAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCGGTGCCTTCAACCGCTCGGCcac < 1:247773/71‑1 (MQ=255) agagATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGttt > 1:386749/1‑39 (MQ=255) agagATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCGGTGCCTTCAACCGCTCGGCcaca > 1:1963955/1‑71 (MQ=255) agagATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCGGTGCCTTCAACCGCTCGGCcac > 1:1700884/1‑70 (MQ=255) ttCGAA‑CTCTGGATCCCTTTCGGGTCGCCGGTTTTCAAGACCg < 1:804925/43‑1 (MQ=255) ttCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCGGTGCCTTCAACCGCTCGGCCACACTTcc < 1:904414/71‑1 (MQ=255) gAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCGGTGCCTTCAACCGCTCGGCCACACTTCCGGa < 1:1200730/71‑1 (MQ=255) gAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCGGTGACtta < 1:3509197/48‑2 (MQ=255) | CAGGCAAAAGAAAAAGGGGTTAGCATTTAGCTAACCCCTTATCTTATTTGGCGGAAGCGCAGAGATTCGAA‑CTCTGGAACCCTTTCGGGTCGCCGGTTTTCAAGACCGGTGCCTTCAACCGCTCGGCCACACTTCCGGA > Exported/688276‑688414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |