New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Exported 3845 =34 (0.580)6 (0.120) 4/90 NT 13.8% coding (112/1287 nt) thrC threonine synthase
?Exported 3877 = 45 (0.860)coding (144/1287 nt) thrC threonine synthase

AACGCCGAGAGGATCTTCGCACTGCGGGTGACAAAATCCAGCTTCAGCATCTCATCAATTTCAGTCAGGCTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Exported/3918‑3845
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgaaGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTGGTGATGAAATCCCACAGGA  >  Exported/3877‑3942
                                                                                                                                            
AACGCCGATAGGATCTTCGCACTGCGGGTGACAAAATCCAGCTTCAGCATCTCATCAATTTCAGTCAGGCT                                                                       <  1:1504593/71‑1
AACGCCGAGAGGATCTTCGCACTGCGGGTGACAAAATCCAGCTTCAGCATCTCATCAATTTCAGTCAGGCT                                                                       <  1:907489/71‑1
AACGCCGAGAGGATCTTCGCACTGCGGGTGACAAAATCCAGCTTCAGCATCTCATCAATTTCAGTCAGGCT                                                                       <  1:2474876/71‑1
AACGCCGAGAGGATCTTCGCACTGCGGGTGACAAAATCCAGCTTCAGCATCTCATCAATTTCAGTCAGGCT                                                                       <  1:2287403/71‑1
AACGCCGAGAGGATCTTCGCACTGCGGGTGACAAAATCCAGCTTCAGCATCTCATCAATTTCAGTCAGGC                                                                        <  1:2739207/70‑1
   GCCGAGAGGATCTTCGCACTGCGGGTGACAAAATCCAGCTTCAGCATCTCATCAATTTCAGTCAGGCTGtt                                                                    >  1:2040890/1‑69
   GCCGAGAGGATCTTCGCACTGCGGGTGACAAAATCCAGCTTCAGCATCTCATCAATTTCAGTCAGGCTGtt                                                                    >  1:3257425/1‑69
   GCCGAGAGGATCTTCGCACTGCGGGTGACAAAATCCAGCTTCAGCATCTCATCAATTTCAGTCAGGCTGt                                                                     >  1:293286/1‑69
                                       AGCTTCAGCATCTCATCAATTTCAGTCAGGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTC                                >  1:773938/1‑71
                                              GCATCTCATCAATTTCAGTCAGGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTT                          >  1:2260610/1‑70
                                                 TCTCATCAATTTCAGTCAGGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATT                      >  1:2066291/1‑71
                                                 TCTCATCAATTTCAGTCAGGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATT                      >  1:2308663/1‑71
                                                     ATCAATTTCAGTCAGGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTG                     <  1:162031/68‑1
                                                     ATCAATTTCAGTCAGGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTG                     <  1:56060/68‑1
                                                                    GCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTGG                    >  1:1065109/1‑54
                                                                    GCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTGG                    >  1:2217272/1‑54
                                                                    GCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTG                     >  1:565841/1‑53
                                                                    GCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGT                           <  1:281772/47‑1
                                                                    GCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGT                           <  1:2697858/47‑1
                                                                    GCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGT                           <  1:198702/47‑1
                                                                     CTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTGGTGATGAAATCCCACAGGA  <  1:2737386/71‑1
                                                                                                                                            
AACGCCGAGAGGATCTTCGCACTGCGGGTGACAAAATCCAGCTTCAGCATCTCATCAATTTCAGTCAGGCTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Exported/3918‑3845
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgaaGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTGGTGATGAAATCCCACAGGA  >  Exported/3877‑3942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.