| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 627360 | 40 (0.680) | 6 (0.120) | 5/88 | NT | 13.4% | intergenic (+40/‑12) | ycaQ/ycaR | conserved hypothetical protein/conserved hypothetical protein |
| ? | Exported | = 627371 | 43 (0.840) | intergenic (+51/‑1) | ycaQ/ycaR | conserved hypothetical protein/conserved hypothetical protein | |||||
TGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/627285‑627360‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatccatAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATCATAATCATTTATGCGACGGGGTCTAT < Exported/627371‑627303 TGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGA > 1:619261/1‑71 GAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATAGTTCCTC > 1:1063696/1‑69 CCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATAGTTCCTCCAGATGG < 1:2583789/67‑1 CGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGAT > 1:2181574/1‑46 TCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCATAGTTCATCCAGATGGATCGGGTT < 1:3013362/71‑1 AATGATTATGATAAGATTTATGCATTCATAACCCGATCCA > 1:1245129/1‑40 AATGATTATGATAAGATTTATGCATTCATAACCCGATCCA > 1:207720/1‑40 ATGATTATGATAAGATTTATGCATTCATAACCCGA < 1:2648904/35‑1 GATTATGATAAGATTTATGCATTCATAACCCGATCCATAGTTCCTCCAGATGGA < 1:223695/54‑1 TTATGATAAGATTTATGCATTCATAACCCGATCCATAGTTCCTCCAGATGGATC > 1:1772563/1‑54 TTATGATAAGATTTATGCATTCATAACCCGATCCATAGTTCCTCCAGATGGATC > 1:3681747/1‑54 ATCCATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATC > 1:31156/1‑49 ATCCATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATC > 1:2845275/1‑49 ATCCATAGTTCCTCCAGATGGATCGGGTTATGAATGC > 1:1008328/1‑37 TCCATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATCATAATCATTTATGCGACGGGGTC < 1:1599795/71‑1 CATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATCATAATCATTTATGCGACGGGGTCTA < 1:683955/71‑1 CATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATCATAATCATTTATGCGACGGGGTCTA > 1:2443649/1‑71 CATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAAT < 1:2825406/40‑1 CATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAAT < 1:604930/40‑1 CATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAAT < 1:1633154/40‑1 ATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATCATAATCATTTATGCGACGGGGTCTAT < 1:1923097/71‑1 ATAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATCATAATCATTTATGCGACGGG < 1:2555918/65‑1 ATAGTCCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATCATAATCATTTATGCGACGGG < 1:143547/65‑1 TAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCT > 1:244511/1‑40 TGCCGCACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAGATTTATGCATTCATAACCCGATCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/627285‑627360‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatccatAGTTCCTCCAGATGGATCGGGTTATGAATGCATAAATCTTATCATAATCATTTATGCGACGGGGTCTAT < Exported/627371‑627303 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |