New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | Exported | 812571 = | 41 (0.700) | 3 (0.060) | 3/94 | NT | 7.2% | coding (447/1680 nt) | ychM | predicted transporter |
? | Exported | 812595 = | 39 (0.720) | coding (423/1680 nt) | ychM | predicted transporter |
GTCGCCTGATTGAGTATATTCCGGTTTCCGTCACCTTAGGTTTCACCTCGGGTATCGGGATCACCATCGGTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/812644‑812571 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taccCGAGGTGAAACCTAAGGTGACGGAAACCGGAATATACTCAATCAGGCGACCAAAGCGTGCCAGACCC > Exported/812595‑812661 GTCGCCTGATTGAGTATATTCCGGTTTCCGTCACCTTAGGTTTCACCTCGGGTATCGGGATCACCATCGGT < 1:1626191/71‑1 CCTCGGGTATCGGGATCACCATCGGTACCCGAGGTGAAACCTAAGGTGACGGAAACCGGAATAT < 1:3249160/64‑1 TCGGGTATCGGGATCACCATCGGTACCCGAGGTGAAACCTAAGGTGACGGAAACCGGAATATAC > 1:1686215/1‑64 ATCGGGATCACCATCGGTACCCGAGGTGAAACCTAAGGTGACGGAAACCGGAATATACTCAA > 1:1942425/1‑62 TACCCGAGGTGAAACCTAAGGGGACGGAAACCGGAATATACTCAATCAGG > 1:1821255/1‑50 CCGAGGTGAAACCTAAGGTGACGGAAACCGGAATATACTCAATCAGGCGACCAAAGCGTGCCAGACCC < 1:2078227/68‑1 GTCGCCTGATTGAGTATATTCCGGTTTCCGTCACCTTAGGTTTCACCTCGGGTATCGGGATCACCATCGGTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/812644‑812571 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taccCGAGGTGAAACCTAAGGTGACGGAAACCGGAATATACTCAATCAGGCGACCAAAGCGTGCCAGACCC > Exported/812595‑812661 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |