New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? Exported 1262733 =55 (0.930)4 (0.080) 3/90 NT 6.8% coding (450/747 nt) cutC copper homeostasis protein
?Exported 1262759 = 61 (1.170)coding (424/747 nt) cutC copper homeostasis protein

TATGTGCGCTAACCCTTTATATACACTCAATAATCTTGCGGAATTGGGCATTGCCCGGGTACTGACATCAGGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Exported/1262808‑1262733
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGT  >  Exported/1262759‑1262828
                                                                                                                                                  
TATGTGCGCTAACCCTTTATATACACTCAATAATCTTGCGGAATTGGGCATTGCCCGGGTACTGACATCAG                                                                             <  1:3543443/71‑1
TATGTGCGCTAACCCTTTATATACACTCAATAATCTTGCGGAATTGGGCATTGCCCGGGTACTGACATCAG                                                                             <  1:3428557/71‑1
  TGTGCGCTAACCCTTTATATACACTCAATAATCTTGCGGAATTGGGCATTGCCCGGGTACTGACATCAGGG                                                                           >  1:37965/1‑71
        CTAACCCTTTATATACACTCAATAATCTTGCGGAATTGGCATTGCCCGGGTACTGACATCAGGGCA                                                                         <  1:3054000/66‑1
                        ACTCAATAATCTTGCGGAATTGGGCATTGCCCGGGTACTGACATCAGGGC                                                                          >  1:2502651/1‑50
                                                CATTGCCCGGGTACTGACATCAGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGC                             >  1:702953/1‑71
                                                CATTGCCCGGGTACTGACATCAGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGC                             >  1:2819083/1‑71
                                                   TGCCCGGGTACTGACATCAGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGG                                   >  1:1675741/1‑62
                                                       CGGGTACTGACATCAGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATA                      <  1:2709244/71‑1
                                                                      GGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATG        >  1:2498182/1‑70
                                                                      GGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATG        >  1:2825761/1‑70
                                                                       GGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAA      <  1:3679306/71‑1
                                                                        GCAATGCCCAATTGCGCAAGATTATTGAGTGTATATAAAGGGTTAG                              >  1:3190507/1‑46
                                                                        GCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAA      >  1:785931/1‑70
                                                                        GCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAG                              <  1:2978242/46‑1
                                                                        GCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAG                              <  1:577062/46‑1
                                                                         CAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAA    <  1:3078222/71‑1
                                                                         CAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAG                              <  1:1082500/45‑1
                                                                           ATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGT  >  1:240244/1‑71
                                                                           ATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGT  <  1:2129482/71‑1
                                                                           ATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGT  <  1:2111180/71‑1
                                                                           ATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGC                           <  1:3376478/46‑1
                                                                           ATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGC                           <  1:2843187/46‑1
                                                                                                                                                  
TATGTGCGCTAACCCTTTATATACACTCAATAATCTTGCGGAATTGGGCATTGCCCGGGTACTGACATCAGGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  Exported/1262808‑1262733
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGT  >  Exported/1262759‑1262828

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.