| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1262733 = | 55 (0.930) | 4 (0.080) | 3/90 | NT | 6.8% | coding (450/747 nt) | cutC | copper homeostasis protein |
| ? | Exported | 1262759 = | 61 (1.170) | coding (424/747 nt) | cutC | copper homeostasis protein | |||||
TATGTGCGCTAACCCTTTATATACACTCAATAATCTTGCGGAATTGGGCATTGCCCGGGTACTGACATCAGGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/1262808‑1262733‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGT > Exported/1262759‑1262828 TATGTGCGCTAACCCTTTATATACACTCAATAATCTTGCGGAATTGGGCATTGCCCGGGTACTGACATCAG < 1:3543443/71‑1TATGTGCGCTAACCCTTTATATACACTCAATAATCTTGCGGAATTGGGCATTGCCCGGGTACTGACATCAG < 1:3428557/71‑1 TGTGCGCTAACCCTTTATATACACTCAATAATCTTGCGGAATTGGGCATTGCCCGGGTACTGACATCAGGG > 1:37965/1‑71 CTAACCCTTTATATACACTCAATAATCTTGCGGAATT‑GGCATTGCCCGGGTACTGACATCAGGGCA < 1:3054000/66‑1 ACTCAATAATCTTGCGGAATTGGGCATTGCCCGGGTACTGACATCAGGGC > 1:2502651/1‑50 CATTGCCCGGGTACTGACATCAGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGC > 1:702953/1‑71 CATTGCCCGGGTACTGACATCAGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGC > 1:2819083/1‑71 TGCCCGGGTACTGACATCAGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGG > 1:1675741/1‑62 CGGGTACTGACATCAGGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATA < 1:2709244/71‑1 GGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATG > 1:2498182/1‑70 GGGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATG > 1:2825761/1‑70 GGCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAA < 1:3679306/71‑1 GCAATGCCCAATTGCGCAAGATTATTGAGTGTATATAAAGGGTTAG > 1:3190507/1‑46 GCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAA > 1:785931/1‑70 GCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAG < 1:2978242/46‑1 GCAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAG < 1:577062/46‑1 CAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAA < 1:3078222/71‑1 CAATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAG < 1:1082500/45‑1 ATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGT > 1:240244/1‑71 ATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGT < 1:2129482/71‑1 ATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGT < 1:2111180/71‑1 ATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGC < 1:3376478/46‑1 ATGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGC < 1:2843187/46‑1 TATGTGCGCTAACCCTTTATATACACTCAATAATCTTGCGGAATTGGGCATTGCCCGGGTACTGACATCAGGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/1262808‑1262733‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcaaTGCCCAATTCCGCAAGATTATTGAGTGTATATAAAGGGTTAGCGCACATATCGAAGGCGCGATGAAAAGT > Exported/1262759‑1262828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |