| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1928403 = | 70 (1.190) | 8 (0.150) | 3/92 | NT | 10.1% | coding (817/1419 nt) | araE | arabinose transporter |
| ? | Exported | 1928438 = | 80 (1.500) | coding (782/1419 nt) | araE | arabinose transporter | |||||
TTTAAGATCAACCGTAACGTCCGTCGTGCTGTGTTTCTCGGTATGTTGTTGCAGGCGATGCAGCAGTTTACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/1928475‑1928403‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taccgAGAAACACAGCACGACGGACGTTACGGTTGATCTTAAACAGTGCCCAACCGCCCTGTTTTAACTTCAG > Exported/1928438‑1928505 TTTAAGATCAACCGTAACGTCCGTCGTGCTGTGTTTCTCGGTATGTTGTTGCAGGCGATGCAGCAGTTTAC > 1:805966/1‑71TTTAAGATCAACCGTAACGTCCGTCGTGCTGTGTTTCTCGGTATGTTGTTGCAGGCGATGCAGCAGTTTAC > 1:3659483/1‑71TTTAAGATCAACCGTAACGTCCGTCGTGCTGTGTTTCTCGGTATGTTGTTGCAGGCGATGCAGCAGTTTAC > 1:3072453/1‑71TTTAAGATCAACCGTAACGTCCGTCGTGCTGTGTTTCTCGGTATGTTGTTGCAGGCGATGCAGCAGTTTA > 1:2752607/1‑70 TTAAGATCAACCGTAACGTCCGTCGTGCTGTGTTTCTCGGTATGTTGTTGCAGGCGATGCAGCAGTTTACC > 1:1799095/1‑71 TTAAGATCAACCGTAACGTCCGTCGTGCTGTGTTTCTCGGTATGTTGTTGCAGGCGATGCAGCAGTTTAC < 1:2680634/70‑1 TCGTGCTGTGTTTCTCGGTATGTTGTTGCAGGCGATGCAGCAGTTTA < 1:2229848/47‑1 TCGGTATGTTGTTGCAGGCGATGCAGCAGTTTACCGAGAAACACAGCACGACGGACGTTACGGTTt < 1:1786970/66‑2 TCGGTATGTTGTTGCAGGCGATGCAGCAGTTTACCGAGAAACACAGCACGACGGACGTTACGGTTG < 1:3353295/66‑1 TCGGTATGTTGTTGCAGGCGATGCAGCAGTTTACCGAGAAACACAGCACGACGGACGTTACGGTTG < 1:145774/66‑1 CGGTATGTTGTTGCAGGCGATGCAGCAGTTTACCGAGAAACACAGCACGACGGACGTTA < 1:2544062/59‑1 CGGTATGTTGTTGCAGGCGATGCAGCAGTTTACCGAGAAACACAGCACGACGGACGTTA < 1:2162469/59‑1 CGGTATGTTGTTGCAGGCGATGCAGCAGTTTACCGAGAAACACAGCACGACGGACGTTA < 1:1926226/59‑1 GGTATGTTGTTGCAGGCGATGCAGCAGTTTACCGAGAAACACAGCACGACGGACGTTACGGTTGATCaga > 1:1483704/1‑67 ATGTTGTTGCAGGCGATGCAGCAGTTTACCGAGAAACACAGCACGACGGACGTTACGGTTGATCTTAAA > 1:2347658/1‑69 ACCGAGAAACACAGCACGACGGACGTTACGGTTGATCTTAAACAGTGCCCAACCGCCCTG < 1:22176/60‑1 CCGAGAAACACAGCACGACGGACGTTACGGTTGATCTTAAACAGTGCCCAACCGCCCTGT > 1:3364644/1‑60 CGAGAAACACAGCACGACGGACGTTACGGTTGATCTTAAACAGTGCCCAACCGCCCTGTTTTAACTTCAG > 1:550181/1‑70 TTTAAGATCAACCGTAACGTCCGTCGTGCTGTGTTTCTCGGTATGTTGTTGCAGGCGATGCAGCAGTTTACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/1928475‑1928403‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taccgAGAAACACAGCACGACGGACGTTACGGTTGATCTTAAACAGTGCCCAACCGCCCTGTTTTAACTTCAG > Exported/1928438‑1928505 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |