| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 2518040 = | 56 (0.950) | 6 (0.110) | 3/94 | NT | 10.6% | coding (1035/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II and guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| ? | Exported | 2518070 = | 50 (0.920) | coding (1005/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II and guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase | |||||
AGATCCGTACCGAAGATATGGACCAGATGGCGGAGATGGGTGTTGCCGCGCACTGGGCTTATAAAGAGCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/2518113‑2518040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcAACACCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCACACCGTGC > Exported/2518070‑2518136 AGATCCGTACCGAAGATATGGACCAGATGGCGGAGATGTGTGTTGCCGCGCACTGGGCTTATAAAGAGCAC < 1:1879417/71‑1 GATCCGTACCGAAGATATGGACCAGATGGCGGAGATGGGTGTTGCCGCGCACTGGGCTTATAAAGAGCACG > 1:2122967/1‑71 GATCCGTACCGAAGATATGGACCAGATGGCGGAGATGGGTGTTGCCGCGCACTGGGCTTATAAAGAGCACG < 1:256879/71‑1 CCGTACCGAAGATATGGACCAGATGGCGGAGATGGGTGTTGCCGCGCACTGGGCTTATAAAGAGCACG > 1:164090/1‑68 GGTGTTGCCGCGCACTGGGCTTATAAAGAGCACGG < 1:2959379/35‑1 CCGCGCACTGGGCTTATAAAGAGCACGGCAACACCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGAT > 1:2441865/1‑71 CGCACTGGGCTTATAAAGAGCACGGCAACACCCATCTCCGCCATCTGGTCCATATCTTC > 1:2098841/1‑59 ACTGGGCTTATAAAGAGCACGGCAACACCCATCTCCGC > 1:1130336/1‑38 ACTGGGCTTATAAAGAGCACGGCAACACCCATCTCCGC > 1:1404647/1‑38 ACTGGGCTTATAAAGAGCACGGCAACACCCATCTCCGC > 1:1657188/1‑38 ACTGGGCTTATAAAGAGCACGGCAACACCCATCTCCGC > 1:2857485/1‑38 CGGCAACACCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCACACCGTGC < 1:2844058/71‑1 CGGCAACACCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCACACCGTGC > 1:655221/1‑71 AGATCCGTACCGAAGATATGGACCAGATGGCGGAGATGGGTGTTGCCGCGCACTGGGCTTATAAAGAGCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/2518113‑2518040‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcAACACCCATCTCCGCCATCTGGTCCATATCTTCGGTACGGATCTGGACCTCAACCGGCACACCGTGC > Exported/2518070‑2518136 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |