New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	Exported	= 2775937	36 (0.610)	7 (0.130)	3/92	NT	16.0%	coding (1749/2187 nt)	arpA	regulator of acetyl CoA synthetase
	?	Exported	= 2775963	41 (0.770)					coding (1723/2187 nt)	arpA	regulator of acetyl CoA synthetase

TATCGAATTTAAACGTATTAAACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Exported/2775864‑2775937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcGACACGGGTTTGTTTATGGCCATGCAGCGCGGACACATGAACGTTATTAATACTATTTTTAACGCATT  <  Exported/2775963‑2775896                                                                                                                                                TATCGAATTTAAACGTATTAAACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCC                                                                          <  1:259649/70‑1    CGAATTTAAACGTATTAAACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCG                                                                       >  1:3341685/1‑70                          AGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCGACACGGGTTTGTTTATGGCCA                                                >  1:1384383/1‑71                               GTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCGACACGGGTTTGTTTATGGCCATGCAG                                           <  1:1731947/71‑1                               GTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCGACACGGGTTTGTTTATGGCCATGCAG                                           <  1:2520357/71‑1                               GTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGCGACACGGGTTTGTTTATGGCCATGCAG                                           <  1:2998089/71‑1                                     CGTTAAAAATAGTATTAATAACGTTCATGTGTCCGC                                                                        <  1:3008950/36‑1                                          AAAATAGTATTAATAACGTTGATGTGTCCGCGCGACACGGGTTTGTTTATGGCCATGCAGCGCG                                       >  1:2867980/1‑64                                          AAAATAGTATTAATAACGTTCATGTGTCCGCGCGACACGGGTTTGTTTATGGCCATGCAGCGCG                                       >  1:1219816/1‑64                                          AAAATAGTATTAATAACGTTCATGTGTCCGCGCGACACGGGTTTGTTTATGGCCATGCAGCGCG                                       >  1:1357618/1‑64                                                                       GCGCGACACGGGTTTGTTTATGGCCATGCAGCGCTGACACATGAACGTTATTAA                    <  1:1323466/54‑1                                                                       GCGCGACACGGGTTTGTTTATGGCCATGCAGCGCGGACACATGAACGTTATTAA                    <  1:3419539/54‑1                                                                        CGCGACACGGGTTTGTTTATGGCCATGCAGCGCGGACACATGAACGTTATTAATACTATTTTTAACGCATT  <  1:277109/71‑1                                                                                                                                                TATCGAATTTAAACGTATTAAACAGAGTGGGTAATGCGTTAAAAATAGTATTAATAACGTTCATGTGTCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  Exported/2775864‑2775937 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcGACACGGGTTTGTTTATGGCCATGCAGCGCGGACACATGAACGTTATTAATACTATTTTTAACGCATT  <  Exported/2775963‑2775896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.