| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 2987034 = | 43 (0.730) | 5 (0.100) | 4/90 | NT | 11.5% | intergenic (+202/‑198) | yjjY/yjtD | hypothetical protein/predicted rRNA methyltransferase |
| ? | Exported | 2987057 = | 39 (0.750) | intergenic (+225/‑175) | yjjY/yjtD | hypothetical protein/predicted rRNA methyltransferase | |||||
TAAACTATTTCCTGACTGTACTAACGGTTGAGTTGTTAAAAAATGCTACATATCCTTCTGTTTACTTAGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/2987106‑2987034‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggataTGTAGCATTTTTTAACAACTCAACCGTTAGTACAGTCAGGAAATAGTTTAGCCTTTTTTAAGCTAAGT > Exported/2987057‑2987124 TAAACTATTTCCTGACTGTACTAACGGTTGAGTTGTTAAAAAATGCTACATATCCTTCTGTTTACTTAGGA > 1:1088941/1‑71TAAACTATTTCCTGACTGTACTAACGGTTGAGTTGTTAAAAAATGCTACATATCCTTCTGTTTACTTAGGA > 1:1081741/1‑71TAAACTATTTCCTGACTGTACTAACGGTTGAGTTGTTAAAAAATGCTACATATCCTTCTGTTTACTTAGG < 1:2550977/70‑1 AGTTGTTAAAAAATGCTACATATCCTTCTGTTTACTTAG > 1:2910558/1‑39 AGTTGTTAAAAAATGCTACATATCCTTCTGTTTACTTAG > 1:3596649/1‑39 TACATATCCTTCTGTTTACTTAGGATATGTAGCATTTTTTAACAACTCAACCGTTAGTACAGTC < 1:2489869/64‑1 CATATCCTTCTGTTTACTTAGGATATGTAGCATTTTTTAACAACTCAACCGTTAGTACAGTCAG > 1:2823654/1‑64 CATATCCTTCTGTTTACTTAGGATATGTAGCATTTTTTAACAACTCAACCGTTAGTACAGTCAG > 1:95343/1‑64 CCTTCTGTTTACTTAGGATATGTAGCATTTTTTAACAACTCAACCGTTAGTACAGTCAGGAAATAGTTTAG > 1:376261/1‑71 TTCTGTTTACTTAGGATATGTAGCATTTTTTAACAACT > 1:2837001/1‑38 TATGTAGCATTTTTTAACAACTCAACCGTTAGTACAGTCAGGAAATAGTTTAGCCTTTTTTAAGCTAAGT > 1:445119/1‑70 TATGTAGCATTTTTTAACAACTCAACCGTTAGTACAGTCAGGAAATAGTTTAGCCTTTT < 1:2618401/59‑1 TATGTAGCATTTTTTAACAACTCAACCGTTAGTACAGTCAGGAAATAGTTTAGCCTTTT < 1:989952/59‑1 TATGTAGCATTTTTTAACAACTCAACCGTTAGTACA < 1:3662039/36‑1 ATGTAGCATTTTTTAACAACTCAACCGTTAGTACAGTCA < 1:2596802/39‑1 ATGTAGCATTTTTTAACAACTCAACCGTTAGTACAGTCA < 1:3294528/39‑1 ATGTAGCATTTTTTAACAACTCAACCGTTAGTACAGTCA < 1:3496696/39‑1 ATGTAGCATTTTTTAACAACTCAACCGTTAGTACAGTCA < 1:2190291/39‑1 TAAACTATTTCCTGACTGTACTAACGGTTGAGTTGTTAAAAAATGCTACATATCCTTCTGTTTACTTAGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < Exported/2987106‑2987034‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggataTGTAGCATTTTTTAACAACTCAACCGTTAGTACAGTCAGGAAATAGTTTAGCCTTTTTTAAGCTAAGT > Exported/2987057‑2987124 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |