| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 2341764 = | 60 (1.020) | 6 (0.120) | 3/88 | NT | 11.8% | coding (1186/1410 nt) | glnA | glutamine synthetase |
| ? | Exported | 2341812 = | 38 (0.750) | coding (1234/1410 nt) | glnA | glutamine synthetase | |||||
GCTGCCCTGCTGATGGCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGTTGCAGGCTCTCTGGAAGAAGCA > Exported/2341695‑2341832 | gctgcCCTGCTGATGGCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACaaaa < 1:2509167/70‑1 (MQ=255) ctgcCCTGCTGATGGCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACaaaaa < 1:3534860/70‑1 (MQ=255) ctgcCCTGCTGATGGCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAAc < 1:234729/71‑1 (MQ=255) cccTGCTGATGGCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCt < 1:3539239/70‑1 (MQ=255) cccTGCTGATGGCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTg < 1:1248600/71‑1 (MQ=255) ctgctgATGGCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTa > 1:2457151/1‑71 (MQ=255) ctgATGGCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCt < 1:3309547/65‑1 (MQ=255) ctgATGGCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGa > 1:3178469/1‑71 (MQ=255) gATGGCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGt > 1:645799/1‑65 (MQ=255) aTGGCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAGAACCTGTAt > 1:3561507/1‑66 (MQ=255) aTGGCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTAt > 1:2274273/1‑66 (MQ=255) aTGGCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCt < 1:835306/71‑1 (MQ=255) tGGCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTg < 1:3469108/71‑1 (MQ=255) ggCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTgc > 1:314994/1‑71 (MQ=255) cGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTgccgc > 1:3115829/1‑71 (MQ=255) ggTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTgccgc < 1:1500725/70‑1 (MQ=255) gaactcgcggtccagatccagttcgttcagtgcttcttccagagagcctgcAACCt > 1:2959359‑M1/52‑56 (MQ=255) gaactcgcggtccagatccagttcgttcagtgcttcttccagagagcctgcAACCt > 1:2291783‑M1/52‑56 (MQ=255) ttCTTGATACCATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTgccgc > 1:2674904/2‑69 (MQ=255) ttCTTGATACCATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTgccgc > 1:3155788/2‑69 (MQ=255) gTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACaaaaa < 1:3106927/52‑1 (MQ=255) tCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCag < 1:2754645/71‑1 (MQ=255) gcTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCag < 1:1434514/70‑1 (MQ=255) ttGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTAt < 1:40725/56‑1 (MQ=255) ttGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTAt < 1:595258/56‑1 (MQ=255) ttGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTAt < 1:1446732/56‑1 (MQ=255) tGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCag > 1:493626/1‑68 (MQ=255) gATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGa > 1:1286025/1‑56 (MQ=255) gATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGa > 1:3703892/1‑56 (MQ=255) gATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGa > 1:3548575/1‑56 (MQ=255) gTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGc < 1:3613966/70‑1 (MQ=255) ccagatccagttcgttcagtgcttcttccagagagcctgcAACCTg > 1:2590428‑M1/41‑46 (MQ=255) tCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCCGAAGAAGCGaaa < 1:3594470/71‑1 (MQ=255) tCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGaaa < 1:3567389/71‑1 (MQ=255) tCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGaa < 1:416138/70‑1 (MQ=255) aaGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGaaa > 1:1054018/1‑69 (MQ=255) aaGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGaaa > 1:2106138/1‑69 (MQ=255) aaGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGaaa > 1:1796389/1‑69 (MQ=255) aGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGaaa > 1:2630601/1‑68 (MQ=255) aGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAagag < 1:1163102/71‑1 (MQ=255) aGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAagag < 1:1898536/71‑1 (MQ=255) aGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAaga < 1:1510928/70‑1 (MQ=255) gAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGaaa > 1:1887525/1‑67 (MQ=255) aaCAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCcagcag < 1:1593348/58‑1 (MQ=255) cAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATcc < 1:1766068/71‑1 (MQ=255) aGATCCATCCGGGCGAAGCCATGGACAAAAACCTGt > 1:3060365/1‑36 (MQ=255) aGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGa < 1:1249047/60‑1 (MQ=255) aGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATccc < 1:1082469/70‑1 (MQ=255) gATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCcac < 1:3079437/71‑1 (MQ=255) atccatccGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAGGCGAAAGAGATCCca > 1:2654397/1‑69 (MQ=255) catccGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAgg < 1:3608040/70‑1 (MQ=255) cagtgcttcttccagagagcctgcAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATc > 1:400513‑M1/25‑63 (MQ=255) atccGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGtt > 1:3637132/1‑71 (MQ=255) atccGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGtt > 1:1270237/1‑71 (MQ=255) gtgcttcttccagagagcctgcAACCTGTATGGCCTGCCGCCAGAAGAAGCGAAAGAGATccc < 1:951210‑M1/41‑1 (MQ=255) gtgcttcttccagagagcctgcAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATccc < 1:3212745‑M1/41‑1 (MQ=255) cGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGTTg > 1:1535764/1‑69 (MQ=255) cGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGTTGc < 1:2608698/70‑1 (MQ=255) tcttccagagagcctgcAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCcac < 1:1451128‑M1/43‑1 (MQ=255) tcttccagagagcctgcAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCcac < 1:1309055‑M1/43‑1 (MQ=255) tcttccagagagcctgcAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCcac < 1:3153643‑M1/43‑1 (MQ=255) aaGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAaga < 1:1265142/49‑1 (MQ=255) aaGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAgaga < 1:348693/51‑1 (MQ=255) aaGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAgaga < 1:3619328/51‑1 (MQ=255) aGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATc > 1:2530561/1‑52 (MQ=255) aGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGTTGCAGGctct < 1:1243591/70‑1 (MQ=255) gCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAgaga > 1:2744586/1‑49 (MQ=255) gCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGTTGc > 1:3282993/1‑62 (MQ=255) gCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGTTCCAGGctctct < 1:3635081/71‑1 (MQ=255) gCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGTTCCAGGctctct < 1:3630691/71‑1 (MQ=255) gCCATGCACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAgaga > 1:476740/1‑49 (MQ=255) aTGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGaaa > 1:3168583/1‑42 (MQ=255) gACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGTTGCAGGCTCTCTGgaag < 1:1392117/70‑1 (MQ=255) gACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGTTGCAGGCTCTCTGgaag < 1:3327185/70‑1 (MQ=255) gACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGTTGCAGGCTCTCTGgaag < 1:175295/70‑1 (MQ=255) cAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGTTGCAGGCTCTCTGGaagaag > 1:3474655/1‑71 (MQ=255) aaaaaCCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGTTGCAGGCTCTCTGGAAGAAGc < 1:1027024/71‑1 (MQ=255) aaaaCCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGTTGCAGGCTCTCTGGAAGAAGCa > 1:3686059/1‑71 (MQ=255) AACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGTTGc < 1:2422052‑M1/50‑1 (MQ=255) | GCTGCCCTGCTGATGGCCGGTCTTGATGGTATCAAGAACAAGATCCATCCGGGCGAAGCCATGGACAAAAACCTGTATGACCTGCCGCCAGAAGAAGCGAAAGAGATCCCACAGGTTGCAGGCTCTCTGGAAGAAGCA > Exported/2341695‑2341832 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |