| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 2704186 = | 53 (0.900) | 4 (0.080) | 3/90 | NT | 6.9% | coding (397/1287 nt) | damX | hypothetical protein |
| ? | Exported | 2704220 = | 62 (1.190) | coding (431/1287 nt) | damX | hypothetical protein | |||||
TTCTGGTTCTACTGCTGTTGATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGC > Exported/2704118‑2704255 | attttccgcagacgtggttcccggcgctggctgcacgccattcgcctgatcggtcgcattgccagcaaGa > 1:2535411‑M1/69‑70 (MQ=255) ttttccgcagacgtggttcccggcgctggctgcacgccattcgcctgatcggtcgcattgccagcaaGATc > 1:344555‑M1/68‑71 (MQ=255) ttttccgcagacgtggttcccggcgctggctgcacgccattcgcctgatcggtcgcattgccagcaaGATc > 1:305985‑M1/68‑71 (MQ=255) cTGGTTCTACTGCTGTTGATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATc < 1:2039601/70‑1 (MQ=255) cTGGTTCTACTGCTGTTGATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATc < 1:45734/70‑1 (MQ=255) cTGGTTCTACTGCTGTTGATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATc > 1:3656203/1‑70 (MQ=255) tGGTTCTACTGCTGTTGATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATc < 1:721642/69‑1 (MQ=255) tccgcagacgtggttcctggcgctggctgcacgccattcgcctgatcggtcgcattgccagcaaGATCaa > 1:1350463‑M1/65‑70 (MQ=255) tccgcagacgtggttcccggcgctggctgcacgccattcgcctgatcggtcgcattgccagcaaGATCaa > 1:1295032‑M1/65‑70 (MQ=255) gTTCTACTGCTGTTGATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCa < 1:2194895/68‑1 (MQ=255) gTTCTACTGCTGTTGATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAAc > 1:719548/1‑71 (MQ=255) gTTCTACTGCTGTTGATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAAc > 1:2920050/1‑71 (MQ=255) gTTCTAATGCTGTTGATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAAc > 1:3720/1‑71 (MQ=255) tCTACTGCTGTTGATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGAt < 1:1782867/64‑1 (MQ=255) tCTACTGCTGTTGATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGAt < 1:1589862/64‑1 (MQ=255) tgctgTTGATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCt > 1:420561/1‑71 (MQ=255) gtggttcccggcgctggctgcacgccattcgcctgatcggtcgcattgccagcaaGATCaa > 1:865850‑M1/56‑61 (MQ=255) ttGATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCg < 1:2958461/70‑1 (MQ=255) gATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCaaa > 1:48756/1‑56 (MQ=255) atcatcGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCgag > 1:1837713/1‑69 (MQ=255) atcatcGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGagaa < 1:2625168/71‑1 (MQ=255) atcatcAGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCgag > 1:481046/1‑69 (MQ=255) catcGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGagaa > 1:2755925/1‑69 (MQ=255) catcGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGagaa > 1:2663058/1‑69 (MQ=255) ggtatcggtTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTa < 1:3024420/70‑1 (MQ=255) ggtatcggtTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTa < 1:616741/70‑1 (MQ=255) gctgcacgccattcgcctgatcggtcgcattgccagcaaGATCAAACCGCGTCTGGCGAGAAGAGTAtt > 1:2825062‑M1/40‑69 (MQ=255) ggtTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCt > 1:3378729/1‑71 (MQ=255) ttCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATc < 1:2736376/68‑1 (MQ=255) ttCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTg < 1:2858819/71‑1 (MQ=255) cTGCGCTAAAAGCCCCCTCGACCACTTCAAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCt > 1:3245905/1‑71 (MQ=255) gcgcTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTgg > 1:3198074/1‑71 (MQ=255) cgcTAAAAGCCCCTTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATAGATCTTGCTgg > 1:2920512/1‑70 (MQ=255) cgcTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTa > 1:920637/1‑57 (MQ=255) cgcTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCt < 1:863859/68‑1 (MQ=255) cgcTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCt < 1:3166717/68‑1 (MQ=255) cgcTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTgg > 1:902169/1‑70 (MQ=255) cgcTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTgg > 1:1908422/1‑70 (MQ=255) gcTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCa < 1:442007/71‑1 (MQ=255) tAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGc < 1:1082707/44‑1 (MQ=255) tAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAAt > 1:1951634/1‑71 (MQ=255) aaaGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAAt < 1:3070770/69‑1 (MQ=255) aGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGa < 1:3146218/71‑1 (MQ=255) gatcggtcgcattgccagcaaGATCAAACCGCGTCTGGc > 1:1471989‑M1/22‑39 (MQ=255) gatcggtcgcattgccagcaaGATCAAACCGCGTCTGGc > 1:562717‑M1/22‑39 (MQ=255) gCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGAc > 1:3136029/1‑71 (MQ=255) gCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGAc > 1:1357631/1‑71 (MQ=255) tcggtcgcattgccagcaaGATCAAACCGCGTCTGGCga < 1:2882528‑M1/20‑1 (MQ=255) ccccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGAcc > 1:2135434/1‑70 (MQ=255) ccccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGAcc > 1:2271766/1‑70 (MQ=255) cccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCg > 1:1488628/1‑70 (MQ=255) cccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGa > 1:849321/1‑71 (MQ=255) cccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGa > 1:2778928/1‑71 (MQ=255) ccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCg < 1:1657853/69‑1 (MQ=255) ccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCg < 1:647935/69‑1 (MQ=255) ccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGAt > 1:2634836/1‑71 (MQ=255) cTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCt < 1:2731471/55‑1 (MQ=255) cTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCt < 1:1286715/55‑1 (MQ=255) cTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCaa > 1:1299347/1‑60 (MQ=255) cTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGAt > 1:2093616/1‑70 (MQ=255) cTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGAt > 1:1044657/1‑70 (MQ=255) cTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGAt > 1:2735251/1‑70 (MQ=255) cGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCaa > 1:2435616/1‑58 (MQ=255) cGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCaa > 1:63094/1‑58 (MQ=255) cGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCaa > 1:455397/1‑58 (MQ=255) gACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAg < 1:249148/70‑1 (MQ=255) ccACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGc < 1:3057757/70‑1 (MQ=255) ccACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGc > 1:871262/1‑70 (MQ=255) aCTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGaa < 1:290277/71‑1 (MQ=255) cTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAAt > 1:114080/1‑71 (MQ=255) ccAGCGATCAAACCGCGTTTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCa > 1:2772490/1‑61 (MQ=255) ccAGCGATCAAACCGCGTCTGGCGAGAAGAGTAtt > 1:3566016/1‑35 (MQ=255) ccAGCGATCAAACCGCGTCTGGCGAGAAGAGTAtt > 1:1380651/1‑35 (MQ=255) ccAGCGATCAAACCGCGTCTGGCGAGAAGAGTAtt > 1:1459126/1‑35 (MQ=255) ccAGCGATCAAACCGCGTCTGGCGAGAAGAGTAtt > 1:1474755/1‑35 (MQ=255) ccAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGa > 1:2860384/1‑37 (MQ=255) ccAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAAt < 1:2193855/68‑1 (MQ=255) ccAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAAt < 1:1120765/68‑1 (MQ=255) ccAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGc > 1:607671/1‑71 (MQ=255) cAGCGATCAAACCGCGTCTGGCTAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCg < 1:1888498/71‑1 (MQ=255) cAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCg < 1:644835/71‑1 (MQ=255) cAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCg < 1:2537485/71‑1 (MQ=255) cAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCg < 1:1259291/71‑1 (MQ=255) aGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGaa < 1:3347067/65‑1 (MQ=255) gCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCaa > 1:1463498/1‑46 (MQ=255) gCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGc < 1:974840/68‑1 (MQ=255) gCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTg > 1:2899551/1‑71 (MQ=255) cGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTg > 1:2487603/1‑70 (MQ=255) cGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTg > 1:1658063/1‑70 (MQ=255) GATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAAt < 1:3357763‑M1/63‑1 (MQ=255) GATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAAt < 1:3127278‑M1/63‑1 (MQ=255) GATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGc > 1:530437‑M1/1‑70 (MQ=255) | TTCTGGTTCTACTGCTGTTGATCATCGGTATCGGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGC > Exported/2704118‑2704255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |