| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1000972 = | 54 (0.920) | 4 (0.080) | 3/90 | NT | 8.2% | coding (221/366 nt) | mdtJ | multidrug efflux system transporter |
| ? | Exported | 1001000 = | 42 (0.810) | coding (193/366 nt) | mdtJ | multidrug efflux system transporter | |||||
AGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAAGAGAGAAATATATACGA > Exported/1000936‑1001063 | aGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCcaca < 1:470469/70‑1 (MQ=255)aGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCcaca > 1:3015280/1‑70 (MQ=255) gCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCcaca < 1:680548/69‑1 (MQ=255) aTAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCa > 1:871599/1‑71 (MQ=255) aTAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCa < 1:1510787/71‑1 (MQ=255) tAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCa < 1:3687268/70‑1 (MQ=255) aaaCTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCAt > 1:230443/1‑70 (MQ=255) cgtcgAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTAc < 1:1039388/70‑1 (MQ=255) cgAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGcc > 1:1955784/1‑70 (MQ=255) gAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTa < 1:668962/71‑1 (MQ=255) gAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTa < 1:694894/71‑1 (MQ=255) aaTAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCt < 1:3404649/69‑1 (MQ=255) aaTAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCt < 1:3690004/69‑1 (MQ=255) aaTAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTaa < 1:1125592/71‑1 (MQ=255) aaTAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTaa < 1:855095/71‑1 (MQ=255) aTAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAg < 1:2982584/71‑1 (MQ=255) tAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTaa > 1:1807542/1‑69 (MQ=255) aCAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGc > 1:2139777/1‑70 (MQ=255) aCAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGc < 1:2456244/70‑1 (MQ=255) cAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGa > 1:324311/1‑71 (MQ=255) aaaCGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAgg > 1:1851518/1‑66 (MQ=255) aaaCGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAtt > 1:1214694/1‑71 (MQ=255) aCGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAtttt > 1:1427518/1‑71 (MQ=255) gCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTaa < 1:3445014/60‑1 (MQ=255) gCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTaa < 1:2689594/60‑1 (MQ=255) cTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAttttttt < 1:220762/71‑1 (MQ=255) tAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAgg > 1:2026410/1‑60 (MQ=255) aaCAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTaa < 1:1037241/70‑1 (MQ=255) aaggtaacggtattttatttattaccttCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACgg > 1:963846‑M2/29‑70 (MQ=255) ggtatcggtattttatttattaccttCCCACAGCGCATAAGCTAc > 1:2886292‑M2/27‑45 (MQ=255) ggtatcggtattttatttattaccttCCCACAGCGCATAAGCTAc > 1:853580‑M2/27‑45 (MQ=255) AATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCg < 1:2632625‑M1/67‑1 (MQ=255) ataaataaAATACCGATACCTTCCCACAGCGCATAAg > 1:2910674/1‑37 (MQ=255) ataaataaAATACCGATACCTTCCCACAGCGCATAAg > 1:712540/1‑37 (MQ=255) taaataaaATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAttttttt < 1:1524577/58‑1 (MQ=255) taaataaaATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAagag < 1:3329063/71‑1 (MQ=255) taaataaaATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAagag < 1:2028599/71‑1 (MQ=255) taaataaaATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAagag < 1:349693/71‑1 (MQ=255) taaataaaATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAagag < 1:2178149/71‑1 (MQ=255) cggtattttatttattaccttCCCACAGCGCATAAGCTACGACTAAGGCGATTTTTTTAAc > 1:1490189‑M2/22‑61 (MQ=255) aaataaaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAaga > 1:1180088/1‑69 (MQ=255) aataaaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTaa > 1:1159819/1‑58 (MQ=255) ataaaataCCGATACCTTCCCACAGCGCATAAGCTACGc < 1:3395615/39‑1 (MQ=255) taaaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAAgagaga > 1:855811/1‑70 (MQ=255) aaaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAagagag > 1:3038824/1‑68 (MQ=255) aaataCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAAGAGAGaaa > 1:3343677/1‑70 (MQ=255) taCCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAAGAGAGAAatat > 1:3626205/1‑70 (MQ=255) ccGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAttttttt > 1:462026/1‑47 (MQ=255) ccGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGAttttttt > 1:3512130/1‑47 (MQ=255) ccGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAAGAGAGAAAtatata > 1:2496980/1‑71 (MQ=255) cGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAAGAGAGAAATATATAc < 1:942818/71‑1 (MQ=255) ttaccttCCCTCAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAAGAGAGAAATATATAcgc < 1:3007029‑M2/64‑2 (MQ=255) ttaccttCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAAGAGAGAAATATATAcgc < 1:3228926‑M2/64‑2 (MQ=255) aTACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAAGAGAGAAatata > 1:2819719/1‑66 (MQ=255) aTACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAAGAGAGAAATATATACGa > 1:3580061/1‑71 (MQ=255) taccttCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAagag > 1:2591142‑M2/7‑56 (MQ=255) taccttCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAAGAGAGAAATATATACGa > 1:3262726‑M2/7‑70 (MQ=255) cccACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAAGAGAGAAatat > 1:944414/1‑58 (MQ=255) | AGCGATAAACTTTCGTCGAATAACAAAACGCTAAACAAGGTAATAAATAAAATACCGATACCTTCCCACAGCGCATAAGCTACGCCTAAGGCGATTTTTTTAACGGCGAAAGAGAGAAATATATACGA > Exported/1000936‑1001063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |