| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1443925 = | 106 (1.800) | 5 (0.090) | 3/92 | NT | 5.8% | coding (197/651 nt) | rcsB | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN |
| ? | Exported | 1443960 = | 68 (1.280) | coding (232/651 nt) | rcsB | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN | |||||
Only 100 of 133 total aligned reads displayed.
TACCGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTATTGGATCT > Exported/1443890‑1444030 | ttcatagtcagaacaatgatcgacaggcttgggaaATGGCATTACCTTAATCGAGTACATCAAGCGCCAtt > 1:2400115‑M1/36‑71 (MQ=255)tACCGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCAtt > 1:678544/1‑71 (MQ=255)tACCGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCAtt > 1:2608653/1‑71 (MQ=255) aCCGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCAtt < 1:1959500/70‑1 (MQ=255) aCCGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCAtt < 1:791505/70‑1 (MQ=255) aCCGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCAtt < 1:216508/70‑1 (MQ=255) aCCGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCAtt < 1:3066016/70‑1 (MQ=255) aCCGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCAtt < 1:1857921/70‑1 (MQ=255) aCCGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCAtt < 1:3547043/70‑1 (MQ=255) ccGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCAttt < 1:6440/70‑1 (MQ=255) ccGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTc < 1:2904753/71‑1 (MQ=255) ccGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTc < 1:3041858/71‑1 (MQ=255) ccGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTc > 1:614072/1‑71 (MQ=255) ccGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTc < 1:3452153/71‑1 (MQ=255) cGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTcc > 1:2326229/1‑71 (MQ=255) cGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTcc > 1:2507676/1‑71 (MQ=255) cGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTcc > 1:1599223/1‑71 (MQ=255) cGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTcc > 1:1580292/1‑71 (MQ=255) cGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGCACATCAAGCGCCATTTcc > 1:3052529/1‑71 (MQ=255) aTCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTc < 1:37937/68‑1 (MQ=255) aTCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTc < 1:662024/68‑1 (MQ=255) ctctcCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAg > 1:3341567/1‑71 (MQ=255) tcCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCaa < 1:2185610/67‑1 (MQ=255) tcCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCaa < 1:2292478/67‑1 (MQ=255) tcCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCt > 1:2052900/1‑71 (MQ=255) tcCATGCCTGGAGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCa < 1:608363/66‑1 (MQ=255) ccATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTg > 1:1077839/1‑71 (MQ=255) aTGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTc < 1:3404741/71‑1 (MQ=255) tGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTc < 1:2328019/70‑1 (MQ=255) cTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTg < 1:3694659/65‑1 (MQ=255) ggCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCAt > 1:1290053/1‑71 (MQ=255) gCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCa < 1:1643892/69‑1 (MQ=255) cGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTg < 1:2828675/71‑1 (MQ=255) cGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTg < 1:3505586/71‑1 (MQ=255) cGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTg < 1:2303994/71‑1 (MQ=255) gATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCa > 1:1087909/1‑54 (MQ=255) gATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCAt > 1:2363914/1‑68 (MQ=255) tAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGt < 1:973154/59‑1 (MQ=255) tAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGt < 1:974617/59‑1 (MQ=255) tgTACGGCGATGGCATTAGCTTAATCAAGTACATCAAGCGCGATTTGCCAAGCCTGTCGATCATTGTTCTg < 1:3646646/70‑1 (MQ=255) gTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGa < 1:1862340/71‑1 (MQ=255) cGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACt < 1:1369700/70‑1 (MQ=255) cGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACt < 1:169091/70‑1 (MQ=255) cGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACt < 1:665657/70‑1 (MQ=255) cGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTa < 1:3205383/71‑1 (MQ=255) cGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTa > 1:850986/1‑71 (MQ=255) gCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTAt < 1:2009845/70‑1 (MQ=255) gATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCa < 1:658082/42‑1 (MQ=255) gATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCa < 1:70181/42‑1 (MQ=255) gATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCa < 1:2006141/42‑1 (MQ=255) gATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATc < 1:2822486/54‑1 (MQ=255) aatggcgcttgatgtacttgattaaggtaatgccatTTCCCAAGCCTGTCGATCATTGTTCTGACTATGaa > 1:1689059‑M2/37‑71 (MQ=255) aatggcgcttgatgtactcgattaaggtaatgccatTTCCCAAGCCTGTCGATCATTGTTCTGACTATGaa > 1:2400115‑M2/37‑71 (MQ=255) atggcgcttgatgtacttgattaaggtaatgccatTTCCCAAGCCTGTCGATCATTGTTCTGACTATGaac < 1:2825488‑M2/36‑1 (MQ=255) atggcgcttgatgtacttgattaaggtaatgccatTTCCCAAGCCTGTCGATCATTGTTCTGACTATGaac < 1:2504565‑M2/36‑1 (MQ=255) ATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGa > 1:1924664‑M1/1‑51 (MQ=255) ATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGaa < 1:50765‑M1/70‑1 (MQ=255) TGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGaac < 1:9721‑M1/70‑1 (MQ=255) TGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGaac < 1:2778636‑M1/70‑1 (MQ=255) GGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATc < 1:2016251‑M1/51‑1 (MQ=255) CATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCGTGTCGATCATTGTTCTGACTATGaacaa < 1:3645893‑M1/69‑1 (MQ=255) CATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGaacaa < 1:596814‑M1/69‑1 (MQ=255) aTTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGaacaacaa < 1:2035427/71‑1 (MQ=255) aTTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGaacaacaa < 1:1446997/71‑1 (MQ=255) aCCTTAATCAAGTACATCAAGCGCCATTTCCCAAGcc > 1:2045341/1‑37 (MQ=255) aCCTTAATCAAGTACATCAAGCGCCATTTCCCAAGc < 1:1271322/36‑1 (MQ=255) aCCTTAATCAAGTACATCAAGCGCCATTTCCCAAGc < 1:417988/36‑1 (MQ=255) aCCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCa > 1:3105637/1‑46 (MQ=255) aCCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGa < 1:1673984/61‑1 (MQ=255) tAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGc > 1:2849953/1‑70 (MQ=255) tAATCAAGTACATCAAGCGCCATTTACCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAAcca > 1:1289580/1‑66 (MQ=255) aTCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTACTGACTATGAACAACAACCCGGCGAt > 1:3498761/1‑71 (MQ=255) tCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCg > 1:1692602/1‑35 (MQ=255) aaGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCt < 1:2795565/71‑1 (MQ=255) aGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGa > 1:2564576/1‑45 (MQ=255) aGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAAccc < 1:3207345/61‑1 (MQ=255) aGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCgg > 1:261025/1‑63 (MQ=255) gTACATCAAGCGCCATTTCCCAAGCCTGTCGATCAt < 1:3569962/36‑1 (MQ=255) aCATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGt > 1:3851/1‑71 (MQ=255) aTCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTc < 1:848987/37‑1 (MQ=255) aTCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGc > 1:23261/1‑71 (MQ=255) tCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCt < 1:2784581/37‑1 (MQ=255) cAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCt < 1:1509149/36‑1 (MQ=255) aaGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCgg > 1:3484420/1‑70 (MQ=255) aaGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCgg > 1:3203096/1‑70 (MQ=255) aaGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCgg < 1:2106035/70‑1 (MQ=255) aGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTa < 1:2845516/71‑1 (MQ=255) gcgcCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTAt < 1:444143/71‑1 (MQ=255) cgcCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGaa > 1:1032816/1‑41 (MQ=255) cgcCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTAtt < 1:3600309/71‑1 (MQ=255) gccatTTCCCAAGCCTGTCGATCATTGTTCTGACTATGaa > 1:3100903‑M2/6‑40 (MQ=255) gccatTTCCCAAGCCTGTCGATCATTGTTCTGACTATGaa > 1:1939101‑M2/6‑40 (MQ=255) gccatTTCCCAAGCCTGTCGATCATTGTTCTGACTATGaa > 1:2149076‑M2/6‑40 (MQ=255) gccatTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTATTg > 1:1196733‑M2/6‑71 (MQ=255) ccatTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTATTgg < 1:3032183‑M2/67‑1 (MQ=255) ccatTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTATTgg < 1:2494310‑M2/67‑1 (MQ=255) tTTCCCAAGCCTGTCGATCATTGTTCTGACTATGaacaa > 1:747301‑M2/2‑39 (MQ=255) tTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTATTGGATc > 1:1634060‑M2/2‑71 (MQ=255) tTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTATTGGATc > 1:185716‑M2/2‑71 (MQ=255) ttCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTa > 1:1388825/1‑63 (MQ=255) | TACCGATCTCTCCATGCCTGGCGATAAGTACGGCGATGGCATTACCTTAATCAAGTACATCAAGCGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTATTGGATCT > Exported/1443890‑1444030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |