| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1557153 = | 62 (1.050) | 3 (0.050) | 3/98 | NT | 5.4% | intergenic (+1003/+260) | dsdA/emrY | D‑serine ammonia‑lyase/predicted multidrug efflux system |
| ? | Exported | 1557174 = | 45 (0.790) | intergenic (+1024/+239) | dsdA/emrY | D‑serine ammonia‑lyase/predicted multidrug efflux system | |||||
ATCCAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCATAATGTCAGGAC > Exported/1557104‑1557244 | aTCCAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTg > 1:769471/1‑71 (MQ=255) ccAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTg < 1:2646681/69‑1 (MQ=255) cAGATCTCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGt < 1:1676965/70‑1 (MQ=255) cAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGt < 1:2542077/70‑1 (MQ=255) cAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGt < 1:988705/70‑1 (MQ=255) cAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGt < 1:3112796/70‑1 (MQ=255) cAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTGGTa < 1:2706676/71‑1 (MQ=255) cAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTGGTa < 1:157496/71‑1 (MQ=255) aGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTg > 1:1702838/1‑67 (MQ=255) aGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTg > 1:2262642/1‑67 (MQ=255) gaagagaaactgagacttcaccggtcaaaatgaatctaccAGCACTAACAGGGTCAGTCCTg > 1:2147982‑M1/41‑62 (MQ=255) agagaaactgagacttcaccggtcaaaatgaatctaccAGCACTAACAGGGTCAGTCCTGGt < 1:1297222‑M1/24‑1 (MQ=255) cccTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGt < 1:339922/61‑1 (MQ=255) cccTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGt < 1:758487/61‑1 (MQ=255) ccTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCAtttt > 1:1338735/1‑71 (MQ=255) ccTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCAtttt > 1:2588183/1‑71 (MQ=255) cTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTg < 1:3230498/71‑1 (MQ=255) cTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTg < 1:2225288/71‑1 (MQ=255) tttATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGa > 1:514893/1‑71 (MQ=255) ttATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGAc > 1:391115/1‑71 (MQ=255) tATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGa < 1:3406931/69‑1 (MQ=255) tATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGa < 1:3365512/69‑1 (MQ=255) tATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGa < 1:3188356/69‑1 (MQ=255) aaGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGt > 1:1141868/1‑70 (MQ=255) aaGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTg < 1:595572/71‑1 (MQ=255) aGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGa < 1:207863/71‑1 (MQ=255) gCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGaa < 1:493100/71‑1 (MQ=255) aTAATTTGCAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTGGTAGATTCATTTTGACCGGTGAAGt < 1:389127/71‑1 (MQ=255) tttGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGtct > 1:1129244/1‑69 (MQ=255) tttGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGtct > 1:3472611/1‑69 (MQ=255) tttGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGtct > 1:105533/1‑69 (MQ=255) tttGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGtct > 1:1788443/1‑69 (MQ=255) tttGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCa < 1:1172205/71‑1 (MQ=255) tttGCAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCa < 1:3557672/71‑1 (MQ=255) ttGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCAtttt > 1:52568/1‑54 (MQ=255) gCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGtt > 1:1496330/1‑71 (MQ=255) cAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTGGTAGATTc > 1:2302518/1‑46 (MQ=255) cAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTGGTAGATTc > 1:2249074/1‑46 (MQ=255) cAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTGGTAGATTc > 1:153614/1‑46 (MQ=255) aGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTtct < 1:21760/71‑1 (MQ=255) gCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGt < 1:874991/66‑1 (MQ=255) gCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGt < 1:3071209/66‑1 (MQ=255) gCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTtctc > 1:1529184/1‑71 (MQ=255) gCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTtctc > 1:2870503/1‑71 (MQ=255) caccaACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCtt < 1:629004/71‑1 (MQ=255) accaACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTctct < 1:3402445/69‑1 (MQ=255) accaACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTc > 1:2874902/1‑71 (MQ=255) cacCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTta < 1:3231655/71‑1 (MQ=255) accaggactgaccctgttagtgctGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTctct < 1:1297222‑M2/38‑1 (MQ=255) gAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTtaagt > 1:1503987/1‑70 (MQ=255) caggactgaccctgttagtgctGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTc > 1:2147982‑M2/23‑62 (MQ=255) aggactgaccctgttagtgctGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTc > 1:2520265‑M2/22‑61 (MQ=255) AGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTtaagt < 1:672222‑M1/69‑1 (MQ=255) cTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGtt < 1:3233846/71‑1 (MQ=255) cTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGt > 1:2067618/1‑70 (MQ=255) tAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGtt < 1:3166945/49‑1 (MQ=255) tAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGtt < 1:1270303/49‑1 (MQ=255) aCAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTaa < 1:2347038/70‑1 (MQ=255) aCAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTaa < 1:2389424/70‑1 (MQ=255) aGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCa > 1:194623/1‑71 (MQ=255) ggggCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCAt < 1:932618/71‑1 (MQ=255) gggTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGtt < 1:1811833/65‑1 (MQ=255) tCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCATAAt < 1:2757572/71‑1 (MQ=255) aGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCa > 1:1521548/1‑65 (MQ=255) gTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTcc < 1:2770138/46‑1 (MQ=255) gTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCATAATGTc < 1:3415236/71‑1 (MQ=255) tCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTtaagtaa < 1:2901388/54‑1 (MQ=255) tCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCATAATGt > 1:132301/1‑69 (MQ=255) ctGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCATAATGTCAg > 1:1824557‑M2/3‑70 (MQ=255) ctGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCATAATGTCAg < 1:1211900‑M2/68‑1 (MQ=255) ctGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCATAATGTCAg > 1:2063856‑M2/3‑70 (MQ=255) ctGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCATAATGTCAg < 1:2940590‑M2/68‑1 (MQ=255) ctGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCATAATGTCAg > 1:1678837‑M2/3‑70 (MQ=255) ggTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTtaag < 1:2330910/47‑1 (MQ=255) ggTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCATAATGTCAGGAc > 1:2861392/1‑71 (MQ=255) | ATCCAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCATAATGTCAGGAC > Exported/1557104‑1557244 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |