| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 965,844 | A→T | 8.5% | V17D (GTT→GAT) | ydeM ← | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 965,844 | 0 | A | T | 8.5% | 165.6 / 6.9 | 59 | V17D (GTT→GAT) | ydeM | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (25/29); new base T (3/2); total (28/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.25e-01 | |||||||||||
CAGAGTGCTGTCATCCATCCATTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTATCTCGCTCAATAAGGC > Exported/965777‑965914 | cAGAGTGCTGTCATCCATCCATTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAaca > 1:751341/1‑70 (MQ=255)cAGAGTGCTGTCATCCATCCATTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAaca > 1:2178624/1‑70 (MQ=255)cAGAGTGCTGTCATCCATCCATTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAaca > 1:1745797/1‑70 (MQ=255) agagTGCTGTCATCCATCCATTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAacac < 1:882199/70‑1 (MQ=255) agTGCTGTCATCCATCCATTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACAtt < 1:3197065/71‑1 (MQ=255) atccatccATTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAATCACATTTGAGATTa > 1:1935879/1‑70 (MQ=255) atccatccATTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTa > 1:369230/1‑70 (MQ=255) atccatccATTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTa > 1:2648572/1‑70 (MQ=255) atccatccATTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTa > 1:2167239/1‑70 (MQ=255) atccatccATTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTAc < 1:674098/71‑1 (MQ=255) atccatTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAACCAGTAAACACATTTGAGATTACAtt > 1:3287565/1‑70 (MQ=255) atccatTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACAtt > 1:2344534/1‑70 (MQ=255) tccatTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGa < 1:760545/71‑1 (MQ=255) catTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGaa < 1:2360795/70‑1 (MQ=255) catTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGaa > 1:1839369/1‑70 (MQ=255) atTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGaaa > 1:1372078/1‑70 (MQ=255) ttttCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTaaa > 1:1746909/1‑46 (MQ=255) ttttCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTaaa > 1:1325237/1‑46 (MQ=255) ttttCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTaaa > 1:370848/1‑46 (MQ=255) ttttCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACt > 1:3261298/1‑71 (MQ=255) ttttCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACt > 1:2487386/1‑71 (MQ=255) atttCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGAtt > 1:1600374/2‑59 (MQ=255) tttCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTAc > 1:2132618/1‑60 (MQ=255) tttCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTg > 1:237225/1‑71 (MQ=255) ttCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTg < 1:1843632/70‑1 (MQ=255) cATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGa < 1:1914080/70‑1 (MQ=255) tGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACTTTTGAGATTACATTGAAAACTGGAggg < 1:764872/71‑1 (MQ=255) aGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTg < 1:198663/57‑1 (MQ=255) aGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTg < 1:426085/57‑1 (MQ=255) gTAAACTGCGACTCGTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACt < 1:3031792/62‑1 (MQ=255) tAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTg > 1:374297/1‑71 (MQ=255) aaCTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTga > 1:1384820/1‑43 (MQ=255) aaCTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTgg < 1:1870268/70‑1 (MQ=255) aaCTGCAACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTgg < 1:3471616/70‑1 (MQ=255) aaCAGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTgg < 1:588433/70‑1 (MQ=255) cTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTgaga < 1:2701781/43‑1 (MQ=255) tGCGACTCTTTTTCAAGGTAAAAACAGTAATCACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTg > 1:12140/1‑70 (MQ=255) tGCGACTCTTTTTCAAGGTAAAAACAGTAATCACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTg > 1:635983/1‑70 (MQ=255) tGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTg > 1:2056943/1‑70 (MQ=255) cGACTCTTTTTCAATGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGt < 1:1806328/69‑1 (MQ=255) cGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGt < 1:2402059/69‑1 (MQ=255) cGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTaa < 1:127945/71‑1 (MQ=255) gACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGTCTGTAAc < 1:2341941/71‑1 (MQ=255) gACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAAc < 1:80184/71‑1 (MQ=255) aCTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTg > 1:1253898/1‑46 (MQ=255) ctctTTTTCAAGGTAAAAACAGTAATCACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGt < 1:1096625/71‑1 (MQ=255) ctctTTTTCAAGGTAAAAACAGTAATCACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGt < 1:1005632/71‑1 (MQ=255) tttCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCa < 1:1462752/69‑1 (MQ=255) tttCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATc > 1:536779/1‑71 (MQ=255) tttCAAGGTAAAAACAGTAAACACATCTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCAt < 1:2963455/70‑1 (MQ=255) ttCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCg > 1:1673503/1‑71 (MQ=255) tCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCg < 1:3532614/70‑1 (MQ=255) tCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCg < 1:3109076/70‑1 (MQ=255) aaGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCt < 1:2208429/70‑1 (MQ=255) gTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTAtct > 1:96631/1‑71 (MQ=255) aaaaaCAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTATCTCg > 1:3219976/1‑71 (MQ=255) aaaaaCAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTATCTCg > 1:1910514/1‑71 (MQ=255) aaaCAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTATCTCGCt > 1:779310/1‑71 (MQ=255) aaCAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTATCTCGCt > 1:862898/1‑70 (MQ=255) aaCAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTATCTCGCTc < 1:1047455/71‑1 (MQ=255) aaCAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTATCTCGCTc < 1:931296/71‑1 (MQ=255) aaCAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTATCTCGCTc < 1:682887/71‑1 (MQ=255) aCAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTATCTCGCTCa < 1:2487190/71‑1 (MQ=255) cAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTATCTCGCTCaa < 1:3088575/71‑1 (MQ=255) aGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTATCTCGCTCaa > 1:3294792/1‑70 (MQ=255) aGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTATCTCGCTCaa > 1:1130023/1‑70 (MQ=255) aaCACATTTGAGATTACATTGAAAACTGGAGGTCTTGGCTGTAACGTGCATCGCTATCTCGCTCAATAAgg < 1:2945443/71‑1 (MQ=255) aaCACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTATCTCGCTCAATAAgg < 1:61485/71‑1 (MQ=255) acacATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTATCTCGCTCAATAAggc < 1:1421602/71‑1 (MQ=255) | CAGAGTGCTGTCATCCATCCATTTTTCATGAGTAAACTGCGACTCTTTTTCAAGGTAAAAACAGTAAACACATTTGAGATTACATTGAAAACTGGAGGGCTTGGCTGTAACGTGCATCGCTATCTCGCTCAATAAGGC > Exported/965777‑965914 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |