| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 980,278 | C→T | 5.9% | V9V (GTG→GTA) | cspI ← | cold shock protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 980,278 | 0 | C | T | 5.9% | 221.0 / 3.4 | 68 | V9V (GTG→GTA) | cspI | cold shock protein |
| Reads supporting (aligned to +/- strand): ref base C (26/38); new base T (2/2); total (28/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
GACAAACACATCTTTGCTGCCATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAGAATGGTCC > Exported/980209‑980348 | gACAAACACATCTTTGCTGCCATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCa > 1:479987/1‑71 (MQ=255) aaaCACATCTTTGCTGCCATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTa < 1:2727818/71‑1 (MQ=255) aaaCACATCTTTGCTGCCATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTa < 1:2277477/71‑1 (MQ=255) acacATCTTTGCTGCCATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTaaa < 1:2227212/71‑1 (MQ=255) cacaTCTTTGCTGCCATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAAc < 1:3266168/71‑1 (MQ=255) cacaTCTTTACTACCATCAACAGGAGAAATAAAGCCGAAACCTTTATCAGCGTTAAACCATTTTACTAAAc > 1:1670177/1‑71 (MQ=255) cacaTCTTTACTACCATCAACAGGAGAAATAAAGCCGAAACCTTTATCAGCGTTAAACCATTTTACTAAAc > 1:2214762/1‑71 (MQ=255) acaTCTTTGCTGCCATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAAc > 1:68072/1‑70 (MQ=255) acaTCTTTGCTGCCATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAAc > 1:1952714/1‑70 (MQ=255) acaTCTTTGCTGCCATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAAc > 1:801449/1‑70 (MQ=255) cTTTGCTGCCATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTa < 1:3571749/63‑1 (MQ=255) tttGCTGCCATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAAc > 1:1066563/1‑65 (MQ=255) ttGCTGCCATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCa > 1:1605349/1‑58 (MQ=255) tgctgcCATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGt < 1:2879782/67‑1 (MQ=255) ctgcCATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCAtttt < 1:841682/71‑1 (MQ=255) ccATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGt > 1:1378120/1‑70 (MQ=255) ccATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGt < 1:3508796/70‑1 (MQ=255) ccATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGt < 1:1004229/70‑1 (MQ=255) aTCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAg < 1:2090371/71‑1 (MQ=255) tCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGa > 1:1199119/1‑71 (MQ=255) cTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGa > 1:1120168/1‑70 (MQ=255) cGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCAc > 1:22512/1‑45 (MQ=255) ggCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTc < 1:1717763/42‑1 (MQ=255) ggCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTc < 1:2020739/42‑1 (MQ=255) ggCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTc < 1:1159330/42‑1 (MQ=255) gagTGATAAAGCCAAAACCTTTATCTGCGTTAAACCATTTTACTAAACCAGTCATTTTATTAGACATAttt < 1:3226215/69‑1 (MQ=255) gagTGATAAAGCCAAAACCTTTATCTGCGTTAAACCATTTTACTAAACCAGTCATTTTATTAGACATAttt < 1:1639919/69‑1 (MQ=255) gCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAatt < 1:2358719/71‑1 (MQ=255) cGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCAc > 1:628724/1‑42 (MQ=255) cGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAatta < 1:1436152/71‑1 (MQ=255) gTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAattat < 1:2450815/71‑1 (MQ=255) gaAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCAtttt < 1:3716857/51‑1 (MQ=255) gaAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCAtttt < 1:759609/51‑1 (MQ=255) gaAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCAtttt < 1:1065795/51‑1 (MQ=255) aaaCCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAatta < 1:2523530/64‑1 (MQ=255) aaaCCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCtt > 1:1085912/1‑71 (MQ=255) aaCCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCtt > 1:1945841/1‑70 (MQ=255) aaaCCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTg > 1:932530/1‑68 (MQ=255) aaCCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTgaag > 1:3236980/1‑70 (MQ=255) aCCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTgaagaa < 1:1315181/71‑1 (MQ=255) ccTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTg < 1:2692405/65‑1 (MQ=255) cTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGt < 1:514736/42‑1 (MQ=255) tttttCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCtttt < 1:763565/62‑1 (MQ=255) ttttCAGGGTTAAACCATTTCACTAAACCAGTCAtttt < 1:3455549/38‑1 (MQ=255) ttttCAGGGTTAAACCATTTCACTAAACCAGTCAtttt < 1:3532901/38‑1 (MQ=255) ttttCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTa > 1:2921583/1‑42 (MQ=255) ttttCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTa > 1:1723033/1‑42 (MQ=255) ttttCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCtttt < 1:2428180/61‑1 (MQ=255) tttCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTa < 1:2002147/70‑1 (MQ=255) tttCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAACAAATTa < 1:6368/70‑1 (MQ=255) aGGGTTAAACCATTTCACTAAACCAGTCATTTTGt > 1:1208505/1‑35 (MQ=255) ttAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGaaa < 1:2767683/59‑1 (MQ=255) aaaGCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTgg > 1:2135431/1‑68 (MQ=255) aaaCCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTggg > 1:1933826/1‑69 (MQ=255) aaCCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAg < 1:3432025/71‑1 (MQ=255) aCCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAAt < 1:9595/56‑1 (MQ=255) aCCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAAt < 1:414305/56‑1 (MQ=255) aCCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAAt < 1:3235119/56‑1 (MQ=255) aCCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTgg < 1:306052/66‑1 (MQ=255) aCCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAg > 1:1755339/1‑70 (MQ=255) aCCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAGa < 1:1001381/71‑1 (MQ=255) aCCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAGa < 1:2459803/71‑1 (MQ=255) ccATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAg > 1:2551409/1‑58 (MQ=255) ccATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAGa > 1:288853/1‑70 (MQ=255) cATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCt < 1:2944285/43‑1 (MQ=255) cATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAg > 1:503320/1‑68 (MQ=255) aTTTCACTAAACCAGTCATTTTGTTAGACATAatt < 1:1512045/35‑1 (MQ=255) aTTTCACTAAACCAGTCATTTTGTTAGACATAatt < 1:1471160/35‑1 (MQ=255) tttCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGcc > 1:523269/1‑57 (MQ=255) tttCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAGAATgg > 1:426641/1‑71 (MQ=255) tttCACTAAACCAATCATTTTGTTAGACATAattatt < 1:802611/37‑1 (MQ=255) cACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAGAATGGTcc > 1:2085563/1‑71 (MQ=255) | GACAAACACATCTTTGCTGCCATCTTTCGGCGTGATGAAACCAAAACCTTTTTCAGGGTTAAACCATTTCACTAAACCAGTCATTTTGTTAGACATAATTATTACCTTTTGAAGAAATTAGCCCTTGGGCAGAATGGTCC > Exported/980209‑980348 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |