| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,093,658 | T→C | 52.7% | T907A (ACA→GCA) | ydiJ ← | predicted FAD‑linked oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,093,658 | 0 | T | C | 52.7% | 11.9 / 133.3 | 93 | T907A (ACA→GCA) | ydiJ | predicted FAD‑linked oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base T (22/22); new base C (21/28); total (43/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.51e-01 | |||||||||||
CGCACCCGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCCATTCATTCGCCAGTAAGACGTTAAACT > Exported/1093593‑1093720 | cgcACCCGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCa > 1:3499268/1‑71 (MQ=255) gcACCCGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCAc > 1:1682694/1‑71 (MQ=255) gcACCCGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCAc > 1:1854504/1‑71 (MQ=255) cACCCGGCAAGGCGGTAACTTCGGTACAGTGCCCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACt > 1:924720/1‑71 (MQ=255) cACCCGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTTACCGCTGACTGTAGCCACt > 1:2401327/1‑71 (MQ=255) cccGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTgg > 1:646728/1‑71 (MQ=255) cccGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTgg > 1:3554191/1‑71 (MQ=255) cccGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTgg < 1:3042745/71‑1 (MQ=255) cccGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTgg < 1:53968/71‑1 (MQ=255) cccGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTgg < 1:275793/71‑1 (MQ=255) ccGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGt < 1:2943608/61‑1 (MQ=255) ccGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGt < 1:539479/61‑1 (MQ=255) cGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCt < 1:3021782/71‑1 (MQ=255) cGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCt < 1:550087/71‑1 (MQ=255) cGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCt < 1:284715/71‑1 (MQ=255) ggCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAg > 1:179864/1‑61 (MQ=255) ggCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAg > 1:2775884/1‑61 (MQ=255) ggCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAg > 1:949416/1‑61 (MQ=255) gCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCtgt < 1:3548979/71‑1 (MQ=255) gCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCtgt < 1:1092311/71‑1 (MQ=255) gCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCtgt < 1:3492234/71‑1 (MQ=255) gCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCtgt < 1:458541/71‑1 (MQ=255) gCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCtgt < 1:2066801/71‑1 (MQ=255) cAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCtgt > 1:1526821/1‑70 (MQ=255) aGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGAc < 1:2858743/71‑1 (MQ=255) aGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGcc > 1:3713919/1‑59 (MQ=255) aGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGAc > 1:2345153/1‑71 (MQ=255) aGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGAc > 1:878084/1‑71 (MQ=255) aGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGAc > 1:1487992/1‑71 (MQ=255) ggCGGTAACTTCGGTACAGTGACCAAAGGAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACt < 1:2437398/71‑1 (MQ=255) ggCGGTAACTTCGGTACAGTGACCAAAGGAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACt < 1:2441714/71‑1 (MQ=255) ggCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCtg > 1:1456122/1‑66 (MQ=255) gCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTc < 1:1306207/71‑1 (MQ=255) gCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTc < 1:2749618/71‑1 (MQ=255) ggTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCa > 1:2223586/1‑56 (MQ=255) ggTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCtgt < 1:1797570/64‑1 (MQ=255) ggTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCt < 1:2698588/62‑1 (MQ=255) ggTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCaa < 1:1825447/71‑1 (MQ=255) ggTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCaa < 1:836511/71‑1 (MQ=255) ggTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCaa < 1:1168209/71‑1 (MQ=255) ggTAACTTCGGAACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCt < 1:1940356/62‑1 (MQ=255) tAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCtg > 1:1221790/1‑61 (MQ=255) tAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCtgt > 1:417939/1‑62 (MQ=255) tAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCtgt > 1:1348116/1‑62 (MQ=255) tAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGa > 1:1056185/1‑64 (MQ=255) tAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGa > 1:1478216/1‑64 (MQ=255) tAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGt > 1:705104/1‑71 (MQ=255) tAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGt > 1:3507889/1‑71 (MQ=255) tAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGt < 1:1779332/71‑1 (MQ=255) tAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGt < 1:3290471/71‑1 (MQ=255) aaCTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGt > 1:3073242/1‑70 (MQ=255) aaCTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTg > 1:2873590/1‑71 (MQ=255) aaCTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTg > 1:1633644/1‑71 (MQ=255) aaCTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGc < 1:690507/58‑1 (MQ=255) aCTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGTgc > 1:1255375/1‑71 (MQ=255) aCTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGTg < 1:2456049/70‑1 (MQ=255) cGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTgcgc < 1:3195873/69‑1 (MQ=255) cGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCtt > 1:2679260/1‑71 (MQ=255) cGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCtt > 1:3007930/1‑71 (MQ=255) cGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGTGCGCtt > 1:2808910/1‑71 (MQ=255) ggTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGt > 1:86141/1‑64 (MQ=255) ggTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGTGCGCtt < 1:662527/70‑1 (MQ=255) tACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGTGCGCTTgcc < 1:2557272/71‑1 (MQ=255) tACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGTGCGCTTgcc < 1:578392/71‑1 (MQ=255) cAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGc > 1:263373/1‑41 (MQ=255) cAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCTTgccag < 1:2793740/71‑1 (MQ=255) cAGTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGTGCGCTTgccag > 1:2481987/1‑71 (MQ=255) gTGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGTGCGCTTgccagcc < 1:1099725/71‑1 (MQ=255) tGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCTTgcc < 1:262492/66‑1 (MQ=255) tGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCTTgcc < 1:2578898/66‑1 (MQ=255) tGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTc < 1:3453743/53‑1 (MQ=255) tGACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGTGCGCTTgccagcca > 1:1306451/1‑71 (MQ=255) gACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCcat > 1:3363365/1‑71 (MQ=255) gACCAAAGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTc < 1:3446419/52‑1 (MQ=255) aCCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCTTgccag > 1:332984/1‑66 (MQ=255) aaaGAAATACCATGATTCACCGCTGACTGTAGCCa > 1:50020/1‑35 (MQ=255) aaaGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCcattcat < 1:2220099/71‑1 (MQ=255) aGAAATACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCCattcattc > 1:2955569/1‑71 (MQ=255) aaaTACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCCATTCATTCGc > 1:1928655/1‑71 (MQ=255) aaTACCATGATTCACCGCTGACTGTAGCCACTGGCtgt > 1:1422405/1‑38 (MQ=255) aaTACCATGATTCACCGCTGACTGTAGCCACTGGCtgt > 1:1253288/1‑38 (MQ=255) aaTACCATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCCATTCATTCGc < 1:892244/70‑1 (MQ=255) aCCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCcattcat < 1:1294880/63‑1 (MQ=255) aCCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCcattcat < 1:362163/63‑1 (MQ=255) aCCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCcattcat < 1:2205129/63‑1 (MQ=255) aCCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCcattcat < 1:2932882/63‑1 (MQ=255) aCCATGATTCACCGCTGACTCTAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCcattcat < 1:1040325/63‑1 (MQ=255) ccATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCCATTCATTCGCCAGt < 1:305357/70‑1 (MQ=255) cATGATTCACCGCTGACTGCAGCCACTGGCTGTGACTCAAGTGCGCTTgcc < 1:830990/51‑1 (MQ=255) tGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCCATTCATTCGCCAGTAAGa < 1:366495/71‑1 (MQ=255) aTTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCCATTCATTCGCCAGTAAGAc < 1:1326824/70‑1 (MQ=255) cACCGCTGACTGCAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCCATTCATTCGCCAGTAAGACGtt > 1:896829/1‑70 (MQ=255) aCCGCTGACTGTAGCCACTGGCTGTGACTCAAGTgcgc < 1:688468/38‑1 (MQ=255) gCTGACTGCAGCCACTGGCTGTGACTCAAGTGCGCTTgcc < 1:3039137/40‑1 (MQ=255) gCTGACTGCAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCCATTCATTCGCCAGTAAGACGTTAAACt < 1:3556624/71‑1 (MQ=255) | CGCACCCGGCAAGGCGGTAACTTCGGTACAGTGACCAAAGAAATACCATGATTCACCGCTGACTGTAGCCACTGGCTGTGACTCAAGTGCGCTTGCCAGCCATTCATTCGCCAGTAAGACGTTAAACT > Exported/1093593‑1093720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |