| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,187,540 | G→A | 34.9% | G10R (GGG→AGG) | yeaI → | predicted diguanylate cyclase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,187,540 | 0 | G | A | 34.9% | 44.3 / 39.2 | 43 | G10R (GGG→AGG) | yeaI | predicted diguanylate cyclase |
| Reads supporting (aligned to +/- strand): ref base G (12/16); new base A (6/9); total (18/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCGTTAACGAAAATTGATCCTGGTCAAAACTATATATCTCT > Exported/1187471‑1187604 | aCCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATggg < 1:2343599/71‑1 (MQ=255)aCCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATggg < 1:1911940/71‑1 (MQ=255)aCCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATgg < 1:2600082/70‑1 (MQ=255)aCCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATgg < 1:153846/70‑1 (MQ=255) cTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGt < 1:1917963/71‑1 (MQ=255) aaTTTAGTTCCAGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGTTATTCtt > 1:581265/1‑70 (MQ=255) aTTTAGTTCCAGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGTTATTCttt < 1:14028/70‑1 (MQ=255) ccAGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATAttt < 1:3433460/70‑1 (MQ=255) cAGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATAtttt < 1:2327924/70‑1 (MQ=255) cAGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATAtttt < 1:3545269/70‑1 (MQ=255) cAGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATAtttt < 1:3455125/70‑1 (MQ=255) aGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGAGGTTa < 1:1749685/54‑1 (MQ=255) aGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGAGGTTa < 1:2565536/54‑1 (MQ=255) aGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGAGGTTa < 1:3128597/54‑1 (MQ=255) aGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGAGGTTa < 1:1896080/54‑1 (MQ=255) aGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGAGGTTa < 1:1569540/54‑1 (MQ=255) aGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGAGGTTa < 1:1126344/54‑1 (MQ=255) aGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGAGCTTa < 1:1387982/54‑1 (MQ=255) aaaCAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTAt < 1:898574/70‑1 (MQ=255) aaCAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCg > 1:2159134/1‑71 (MQ=255) aaCAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCg < 1:2747606/71‑1 (MQ=255) aCAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCg < 1:582071/70‑1 (MQ=255) aCAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGAGGTTa < 1:1421674/49‑1 (MQ=255) aaTCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCGTTa < 1:1854261/71‑1 (MQ=255) cATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATAtt < 1:1732225/57‑1 (MQ=255) tCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCGTTAACGaa < 1:934417/70‑1 (MQ=255) aaaaTGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCGTTAACGAAAATTGa > 1:1774024/1‑71 (MQ=255) aaaaTGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCGTTAACGAAAATTGa < 1:1186799/71‑1 (MQ=255) aaaTGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCGTTAACGAAAATTGa > 1:2910027/1‑70 (MQ=255) aaaTGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCGTTAACGAAAATTGAt > 1:1893100/1‑71 (MQ=255) tGATTCAGTCAACACGTATTTCCATGGGGTTATTCt > 1:1159983/1‑36 (MQ=255) tGATTCAGTCAACACGTATTTCCATGAGGTTATTCtt > 1:2501842/1‑37 (MQ=255) tGATTCAGTCAACACGTATTTCCATGAGGTTATTCtt > 1:2104378/1‑37 (MQ=255) tGATTCAGTCAACACGTATTTCCATGAGGTTATTCtt > 1:1554628/1‑37 (MQ=255) tGATTCAGTCAACACGTATTTCCATGAGGTTATTCtt > 1:1168397/1‑37 (MQ=255) aGTCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCg < 1:1846575/47‑1 (MQ=255) aGTCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCGTTAACGAAAATTGATCCTGGTCaa < 1:1529208/71‑1 (MQ=255) tCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCGtt > 1:811984/1‑47 (MQ=255) tCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCGtt > 1:881547/1‑47 (MQ=255) acacGTATTTCCATGAGGTTATTCTTTAAATATTTTTTATCGTTAACGAAAATTGATCCTGGTCAAAACta < 1:1513902/71‑1 (MQ=255) cacGTATTTCCATGAGGTTATTCTTTAAATAtttttt > 1:912957/1‑37 (MQ=255) acGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCGTTAACGAAAATTGATc > 1:93423/1‑56 (MQ=255) gTATTTCCATGAGGTTATTCTTTAAATATTTTTTATCGTTAACGAAAATTGATCCTGGTCAAAACtatata > 1:3296496/1‑71 (MQ=255) tttCCATGGGGTTATTCTTTAAATATTTTTTATCGTTAACGAAAATTGATCCTGGTCAAAACt < 1:1249647/63‑1 (MQ=255) tttCCATGGGGTTATTCTTTAAATATTTTTTATCGTTAACGAAAATTGATCCTGGTCAAAACTATATAtct > 1:1307647/1‑71 (MQ=255) ttCCATGGGGTTATTCTTTAAATATTTTTTATCGTTAACGAAAATTGATCCTGGTCAAAACTATATAtctc > 1:3428896/1‑71 (MQ=255) tCCATGGGGTTATTCTTTAAATATTTTTTATCGTTAACGAAAATTGATCCTGGTCAAAACTATATATctct > 1:1927544/1‑71 (MQ=255) | ACCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGATTCAGTCAACACGTATTTCCATGGGGTTATTCTTTAAATATTTTTTATCGTTAACGAAAATTGATCCTGGTCAAAACTATATATCTCT > Exported/1187471‑1187604 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |