Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | Exported | 1,362,418 | A→G | 5.9% | intergenic (‑39/‑93) | mrp ← / → metG | antiporter inner membrane protein/methionyl‑tRNA synthetase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | Exported | 1,362,418 | 0 | A | G | 5.9% | 299.6 / 7.8 | 101 | intergenic (‑39/‑93) | mrp/metG | antiporter inner membrane protein/methionyl‑tRNA synthetase |
Reads supporting (aligned to +/- strand): ref base A (46/49); new base G (3/3); total (49/52) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.37e-01 |
Only 100 of 107 total aligned reads displayed.
GTGATTTGGCCTGGGATTGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTATCTAACCCCTTTTC > Exported/1362352‑1362487 | gTGATTTGGCCTGGGATTGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGttt < 1:1308471/71‑1 (MQ=255) gTGATTTGGCCTGGGATTGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGt < 1:1494749/69‑1 (MQ=255) tGATTTGGCCTGGGATTGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTa > 1:989718/1‑71 (MQ=255) aTTTGGCCTGGGATTGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTAc < 1:2292798/70‑1 (MQ=255) tttGGCCTGGGATTGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACTATCAGCTGATGGTTTATCt < 1:1240427/71‑1 (MQ=38) tGGCCTGGGATTGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTg > 1:680829/1‑70 (MQ=255) ggCCTGGGATTGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTga < 1:536263/70‑1 (MQ=255) ggCCTGGGATTGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTg > 1:1114221/1‑69 (MQ=255) gCCTGGGATTGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTTCCTgaa < 1:3724011/70‑1 (MQ=255) gCCTGGGATTGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTgaag < 1:2957832/71‑1 (MQ=255) ggATTGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAat < 1:1315448/69‑1 (MQ=255) gtttGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACGATCAGCTGATAGTTTACCTgaaga < 1:20327/64‑1 (MQ=255) tGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAAtata > 1:934543/1‑68 (MQ=255) tcgttcATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAg > 1:2534982/1‑71 (MQ=255) ttcATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGtac > 1:1734717/1‑71 (MQ=255) ttcATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGtac > 1:2733916/1‑71 (MQ=255) ttcATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGtac < 1:2311476/71‑1 (MQ=255) cATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGtact > 1:2300195/1‑70 (MQ=255) cATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGtact > 1:2456184/1‑70 (MQ=255) tCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCt < 1:2584561/48‑1 (MQ=255) cccGATTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATagag > 1:505879/1‑60 (MQ=255) cccGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATagag > 1:25862/1‑60 (MQ=255) cccGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATagag > 1:3231713/1‑60 (MQ=255) cccGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGtacttact > 1:3212023/1‑71 (MQ=255) ccGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGtacttact < 1:2424689/70‑1 (MQ=255) ccGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGtacttact < 1:2769040/70‑1 (MQ=255) cGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTActtactta < 1:325019/71‑1 (MQ=255) cGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTActtactta < 1:2106392/71‑1 (MQ=255) cTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTAcc < 1:1233304/41‑1 (MQ=255) cTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTAcc < 1:1123310/41‑1 (MQ=255) cTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTaa < 1:2939267/69‑1 (MQ=255) ttttttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACAtt < 1:227624/69‑1 (MQ=255) ttttttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACAtt < 1:435255/69‑1 (MQ=255) ttttGTATAGATAAACCATCAGCTGATAGTTTACCTgaagaa > 1:1134338/1‑42 (MQ=255) ttttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACAtttt < 1:3017868/69‑1 (MQ=255) ttttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACAtttt < 1:1674054/69‑1 (MQ=255) ttttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACAt < 1:438311/66‑1 (MQ=255) ttttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTcc > 1:3151622/1‑71 (MQ=255) ttttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTcc > 1:3205798/1‑71 (MQ=255) ttttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTcc > 1:3421195/1‑71 (MQ=255) ttttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTcc > 1:1529709/1‑71 (MQ=255) ttttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTc > 1:3530445/1‑70 (MQ=255) ttttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTc > 1:1046480/1‑70 (MQ=255) ttttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTc > 1:158982/1‑70 (MQ=255) ttttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTc < 1:1446998/70‑1 (MQ=255) ttttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTc > 1:2215406/1‑70 (MQ=255) tttGTATAGATAAACCATCAGCTGATAGTTTACCTgaa > 1:261210/1‑38 (MQ=255) ttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACAttt > 1:3165101/1‑66 (MQ=255) ttGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACAttt > 1:733850/1‑66 (MQ=255) gTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCAt < 1:2510063/70‑1 (MQ=255) gTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCAt < 1:3123049/70‑1 (MQ=255) gTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCAt < 1:668596/70‑1 (MQ=255) gTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCAt < 1:2164859/70‑1 (MQ=255) gTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCAt < 1:844195/70‑1 (MQ=255) gTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCAt < 1:767919/70‑1 (MQ=255) tataGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTActtactta < 1:3274028/57‑1 (MQ=255) tataGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTActtactta < 1:697024/57‑1 (MQ=255) taGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTgg < 1:1436616/71‑1 (MQ=255) aGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTccga > 1:424787/1‑63 (MQ=255) aGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTccc > 1:647512/1‑64 (MQ=255) aGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTgg > 1:3554033/1‑70 (MQ=255) gATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGaa > 1:268172/1‑42 (MQ=255) gtAAACTATCAGCTGATGGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCAtt < 1:3396541/64‑1 (MQ=38) gtAAACTATCAGCTGATGGTTTACCTGAAGAAAATAGAGAAGTACTTACTTAACATTTTCCCAtt < 1:886247/64‑1 (MQ=37) tAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTAc > 1:2283152/1‑70 (MQ=255) tAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACt < 1:879229/71‑1 (MQ=255) aaaCCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTa > 1:189570/1‑71 (MQ=255) aaaCCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTa > 1:3590808/1‑71 (MQ=255) aaaCCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTAATTAACATTTTc > 1:1159784/1‑58 (MQ=255) aaCCATCAGCTGATAGTTTACCTGAAGAATATAGAGaa > 1:3687740/1‑38 (MQ=255) aaCCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTa < 1:1229285/70‑1 (MQ=255) aaCCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTa < 1:2238198/70‑1 (MQ=255) aaCCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTAt > 1:1554592/1‑71 (MQ=255) aCCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTATc > 1:1254277/1‑71 (MQ=255) aCCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTATc < 1:3476155/71‑1 (MQ=255) ctaTCAGCTGATGGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTATc > 1:2234617/3‑70 (MQ=255) ctaTCAGCTGATGGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTATc > 1:1122395/3‑70 (MQ=255) ctaTCAGCTGATGGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTATc > 1:3114279/3‑70 (MQ=255) ccATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTATc > 1:3170391/1‑70 (MQ=255) ccATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTCAACATTTTCCCATTTGGTACTATc > 1:869977/1‑70 (MQ=255) cATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTATCTa < 1:81874/71‑1 (MQ=255) aGCTGATAGTTTACCTGTAGAATATAGAGAAGTACTTACTTAAGATTTTCCCATTTGGTACTATCTAAcc < 1:3729958/70‑1 (MQ=255) aGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACAtt < 1:2737051/47‑1 (MQ=255) gCTGATAGTTTACCTGAAGAATATAGATAAGTACTTACTTAACATTTTCCCAtt < 1:1484148/54‑1 (MQ=255) gCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACAtt < 1:3222488/46‑1 (MQ=255) cTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACAtttt > 1:2267784/1‑47 (MQ=255) cTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACAtttt > 1:3029730/1‑47 (MQ=255) cTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACAtttt > 1:2795740/1‑47 (MQ=255) aTAGTTTACCTGAAGAATATAGAGAAGTActtactta < 1:1871173/37‑1 (MQ=255) aTAGTTTACCTGAAGAATATAGAGAAGTActtactta < 1:1669465/37‑1 (MQ=255) aTAGTTTACCTGAAGAATATAGAGAAGTActtactta < 1:1654897/37‑1 (MQ=255) aTAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTATCTAACCCCtttt < 1:2708827/71‑1 (MQ=255) tAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTATCTAACCCCtttt > 1:3031558/1‑70 (MQ=255) tAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTATCTAACCCCTTTTc < 1:2098131/71‑1 (MQ=255) aGTTTACCTGAAGAATATAGAGAAGTACTTACTTAAc > 1:2417861/1‑37 (MQ=255) aGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACAt < 1:2899753/39‑1 (MQ=255) aGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACAt < 1:1426880/39‑1 (MQ=255) aGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACAt < 1:3219870/39‑1 (MQ=255) aGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCAt < 1:788619/47‑1 (MQ=255) aGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCAt < 1:3690137/47‑1 (MQ=255) | GTGATTTGGCCTGGGATTGTTCGTTCATCCCGACTCCTTTTTTGTATAGATAAACCATCAGCTGATAGTTTACCTGAAGAATATAGAGAAGTACTTACTTAACATTTTCCCATTTGGTACTATCTAACCCCTTTTC > Exported/1362352‑1362487 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |