| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 17,199 | G→T | 48.1% | intergenic (+3/‑57) | nhaA → / → nhaR | sodium‑proton antiporter/DNA‑binding transcriptional activator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 17,199 | 0 | G | T | 48.1% | 27.8 / 63.8 | 54 | intergenic (+3/‑57) | nhaA/nhaR | sodium‑proton antiporter/DNA‑binding transcriptional activator |
| Reads supporting (aligned to +/- strand): ref base G (15/13); new base T (15/11); total (30/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.89e-01 | |||||||||||
GGTTCTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAG > Exported/17131‑17260 | ggTTCTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGa < 1:2978048/71‑1 (MQ=255)ggTTCTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGa < 1:400743/71‑1 (MQ=255) tCTATCTCCTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACgg > 1:1086087/1‑71 (MQ=255) cTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGt > 1:3000354/1‑71 (MQ=255) tATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGtt > 1:2533572/1‑71 (MQ=255) aTCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGtt > 1:2337344/1‑70 (MQ=255) tctcTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGtt < 1:2726809/69‑1 (MQ=255) tctTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTAcc > 1:2830906/1‑71 (MQ=255) tctTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTAcc > 1:1305032/1‑71 (MQ=255) tctTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTAc > 1:2355195/1‑70 (MQ=255) ttCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTAcc < 1:1498829/69‑1 (MQ=255) ttCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTa < 1:2152936/67‑1 (MQ=255) ttCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTAcc < 1:2422090/69‑1 (MQ=255) ttCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTAcc < 1:1457159/69‑1 (MQ=255) cggcggTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCggg > 1:14492/1‑70 (MQ=255) cggcggTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCggg > 1:2135461/1‑70 (MQ=255) cggcggTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCg < 1:1615722/68‑1 (MQ=255) ggcggTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCg < 1:2143210/67‑1 (MQ=255) cggTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGc > 1:2875440/1‑71 (MQ=255) cggTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGc > 1:1816038/1‑71 (MQ=255) cggTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGc > 1:3664315/1‑71 (MQ=255) cggTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACAGGGGAGc > 1:3697690/1‑71 (MQ=255) tAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCgg > 1:1554879/1‑63 (MQ=255) aTTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATa < 1:1263211/70‑1 (MQ=255) aTTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATa < 1:1974863/70‑1 (MQ=255) gATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACgg < 1:2588376/71‑1 (MQ=255) gATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACgg < 1:3262086/71‑1 (MQ=255) tACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAg < 1:2074457/59‑1 (MQ=255) aCAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTAcc < 1:373978/52‑1 (MQ=255) aCAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCg > 1:1759011/1‑53 (MQ=255) aCAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCg > 1:1452822/1‑53 (MQ=255) aCAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCg > 1:1431891/1‑53 (MQ=255) aCAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCg > 1:276479/1‑53 (MQ=255) aCAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCg > 1:27939/1‑53 (MQ=255) aCAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGAAAGGACGGTTTACCg > 1:608163/1‑53 (MQ=255) cAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACgg > 1:3355920/1‑67 (MQ=255) aGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTccc < 1:3399643/71‑1 (MQ=255) ttACGCGTTCGTTTGCGTCCATCAGTTTGACAGGa < 1:2342510/35‑1 (MQ=255) tACGCGGTCGTTTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATaaa > 1:481918/1‑56 (MQ=255) ttcgttTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACg > 1:2371019/1‑52 (MQ=255) ttcgttTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACg > 1:139949/1‑52 (MQ=255) ttcgttTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACg > 1:1188383/1‑52 (MQ=255) ttcgttTGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCTccc < 1:3172635/58‑1 (MQ=255) gttTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATa < 1:1033630/45‑1 (MQ=255) tttGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCttt < 1:82011/57‑1 (MQ=255) tGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCa > 1:1465419/1‑58 (MQ=255) tGCGTCCATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCAtt > 1:2341967/1‑60 (MQ=255) tCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGgagaga < 1:1162599/71‑1 (MQ=255) ccATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGgagaga > 1:2125531/1‑70 (MQ=255) cATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGaaa > 1:2145104/1‑71 (MQ=255) cATCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGaa < 1:3030140/70‑1 (MQ=255) aTCAGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAAt > 1:2060019/1‑71 (MQ=255) tCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATg < 1:3581221/71‑1 (MQ=255) aGTTTGACATGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCGGGGAGAGAAATGAg < 1:3320489/71‑1 (MQ=255) | GGTTCTATCTCTTCGGCGGTAATTGGATACAGCTGGTTACGCGTTCGTTTGCGTCCATCAGTTTGACAGGACGGTTTACCGGGGAGCCATAAACGGCTCCCTTTTCATTGTTATCAGGGAGAGAAATGAG > Exported/17131‑17260 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |