| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,557,166 | T→G | 12.3% | intergenic (+1016/+247) | dsdA → / ← emrY | D‑serine ammonia‑lyase/predicted multidrug efflux system |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,557,166 | 0 | T | G | 12.3% | 133.1 / 18.4 | 65 | intergenic (+1016/+247) | dsdA/emrY | D‑serine ammonia‑lyase/predicted multidrug efflux system |
| Reads supporting (aligned to +/- strand): ref base T (22/35); new base G (4/4); total (26/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.05e-01 | |||||||||||
CCAATCCAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCATAAT > Exported/1557101‑1557236 | ccAATCCAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTc < 1:916065/71‑1 (MQ=255) cAATCCAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTc > 1:2715270/1‑70 (MQ=255) aTCCAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTg > 1:769471/1‑71 (MQ=255) ccAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCtt < 1:3033530/69‑2 (MQ=255) ccAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTg < 1:2646681/69‑1 (MQ=255) cAGATCTCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGt < 1:1676965/70‑1 (MQ=255) cAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGt < 1:988705/70‑1 (MQ=255) cAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGt < 1:3112796/70‑1 (MQ=255) cAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGt < 1:2542077/70‑1 (MQ=255) cAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTGGTa < 1:157496/71‑1 (MQ=255) cAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTGGTa < 1:2706676/71‑1 (MQ=255) aGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTg > 1:2262642/1‑67 (MQ=255) aGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTg > 1:1702838/1‑67 (MQ=255) gaagagaaactgagacttcaccggtcaaaatgaatctaccAGCACTAACAGGGTCAGTCCt > 1:2520265‑M1/41‑61 (MQ=255) gaagagaaactgagacttcaccggtcaaaatgaatctaccAGCACTAACAGGGTCAGTCCTg > 1:2147982‑M1/41‑62 (MQ=255) cgcCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCt < 1:2436118/60‑1 (MQ=255) cgcCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCt < 1:2135999/60‑1 (MQ=255) cgcCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCt < 1:1985070/60‑1 (MQ=255) agagaaactgagacttcaccggtcaaaatgaatctaccAGCACTAACAGGGTCAGTCCTGGt < 1:1297222‑M1/24‑1 (MQ=255) cccTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGt < 1:758487/61‑1 (MQ=255) cccTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGt < 1:339922/61‑1 (MQ=255) ccTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCAtttt > 1:1338735/1‑71 (MQ=255) ccTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCAtttt > 1:2588183/1‑71 (MQ=255) cTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTg < 1:2225288/71‑1 (MQ=255) cTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTg < 1:3230498/71‑1 (MQ=255) tttATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGa > 1:514893/1‑71 (MQ=255) ttATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGAc > 1:391115/1‑71 (MQ=255) tATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGa < 1:3406931/69‑1 (MQ=255) tATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGa < 1:3365512/69‑1 (MQ=255) tATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGa < 1:3188356/69‑1 (MQ=255) aaGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGt > 1:1141868/1‑70 (MQ=255) aaGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTg < 1:595572/71‑1 (MQ=255) aGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGa < 1:207863/71‑1 (MQ=255) gCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGaa < 1:493100/71‑1 (MQ=255) aTAATTTGCAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTGGTAGATTCATTTTGACCGGTGAAGt < 1:389127/71‑1 (MQ=255) aaTTTGCAAGCCACCAACACCGAGCACTAACAGGGt < 1:2499561/36‑1 (MQ=255) tttGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGtct > 1:3472611/1‑69 (MQ=255) tttGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGtct > 1:1788443/1‑69 (MQ=255) tttGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGtct > 1:1129244/1‑69 (MQ=255) tttGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGtct > 1:105533/1‑69 (MQ=255) tttGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCa < 1:1172205/71‑1 (MQ=255) tttGCAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCa < 1:3557672/71‑1 (MQ=255) ttGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCAtttt > 1:52568/1‑54 (MQ=255) gCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGtt > 1:1496330/1‑71 (MQ=255) cAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTGGTAGATTc > 1:153614/1‑46 (MQ=255) cAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTGGTAGATTc > 1:2249074/1‑46 (MQ=255) cAAGCCACCAACACCGAGCACTAACAGGGGCAGTCCTGGTAGATTc > 1:2302518/1‑46 (MQ=255) aGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTtct < 1:21760/71‑1 (MQ=255) gCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGt < 1:874991/66‑1 (MQ=255) gCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGt < 1:3071209/66‑1 (MQ=255) gCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTtctc > 1:1529184/1‑71 (MQ=255) gCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTtctc > 1:2870503/1‑71 (MQ=255) caccaACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCtt < 1:629004/71‑1 (MQ=255) accaACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTctct < 1:3402445/69‑1 (MQ=255) accaACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTc > 1:2874902/1‑71 (MQ=255) cacCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTta < 1:3231655/71‑1 (MQ=255) gAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTtaagt > 1:1503987/1‑70 (MQ=255) AGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTtaagt < 1:672222‑M1/69‑1 (MQ=255) cTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGtt < 1:3233846/71‑1 (MQ=255) cTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGt > 1:2067618/1‑70 (MQ=255) tAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGtt < 1:1270303/49‑1 (MQ=255) tAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGtt < 1:3166945/49‑1 (MQ=255) aCAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTaa < 1:2389424/70‑1 (MQ=255) aCAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTaa < 1:2347038/70‑1 (MQ=255) aGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCa > 1:194623/1‑71 (MQ=255) ggggCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCAt < 1:932618/71‑1 (MQ=255) gggTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGtt < 1:1811833/65‑1 (MQ=255) tCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCATAAt < 1:2757572/71‑1 (MQ=255) | CCAATCCAGATCGCGCCCTTTATCAAGCATAATTTGCAAGCCACCAACACCGAGCACTAACAGGGTCAGTCCTGGTAGATTCATTTTGACCGGTGAAGTCTCAGTTTCTCTTCCTTTAAGTAAGGTTAAGCATAAT > Exported/1557101‑1557236 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |