| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | Exported | 1,585,147 | T→A | 11.2% | N209K (AAT→AAA) | cysZ → | predicted inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | Exported | 1,585,147 | 0 | T | A | 11.2% | 246.4 / 20.3 | 89 | N209K (AAT→AAA) | cysZ | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (35/44); new base A (6/4); total (41/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
Only 100 of 101 total aligned reads displayed.
CCCCTTCGATAACCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTTCATCATGCCCGTTG > Exported/1585078‑1585217 | ccccTTCGATAACCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAata < 1:884501/71‑1 (MQ=255)ccccTTCGATAACCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAata < 1:1465205/71‑1 (MQ=255)ccccTTCGATAACCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAat < 1:3252088/70‑1 (MQ=255)ccccTTCGATAACCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAat < 1:3408468/70‑1 (MQ=255) ccTTCGATAACCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATg < 1:2809595/71‑1 (MQ=255) cGATAACCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGt > 1:2585901/1‑71 (MQ=255) aTAACCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGttt > 1:922554/1‑71 (MQ=255) aTAACCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGttt > 1:468052/1‑71 (MQ=255) tAACCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTg < 1:1361168/71‑1 (MQ=255) tAACCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTg < 1:1690965/71‑1 (MQ=255) aaCCACAAAGTGCCTTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTgg > 1:3075738/1‑71 (MQ=255) aaCCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTgg > 1:3015250/1‑71 (MQ=255) aaCCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTgg > 1:2128323/1‑71 (MQ=255) aCCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTgg < 1:642841/70‑1 (MQ=255) aCCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTgg < 1:1059890/70‑1 (MQ=255) aCCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGt > 1:606961/1‑71 (MQ=255) aCCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAAACTGCATATTGGt < 1:1405488/71‑1 (MQ=38) aCCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAAACTGCATATTGGt < 1:3134222/71‑1 (MQ=38) ccACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTg > 1:1989334/1‑71 (MQ=255) cacaAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAata < 1:3185402/58‑1 (MQ=255) cacaAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAata < 1:2044416/58‑1 (MQ=255) acaAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCt < 1:692628/71‑1 (MQ=255) caAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCtt > 1:2458363/1‑71 (MQ=255) caAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCtt > 1:369205/1‑71 (MQ=255) gTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAAc < 1:3532075/71‑1 (MQ=255) tGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGtt < 1:1410530/58‑1 (MQ=255) tGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAAc > 1:1648869/1‑70 (MQ=255) tttAAAGAGATGCGCACCGCCATGCGCACACGCAAAATCACCAATATg < 1:1417290/48‑1 (MQ=255) tAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTg < 1:2749584/70‑1 (MQ=255) tAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTg < 1:771267/70‑1 (MQ=255) tAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTg < 1:1870844/70‑1 (MQ=255) tAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGt > 1:2071737/1‑71 (MQ=255) tAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAAACTGCATATTGGt < 1:2516620/55‑1 (MQ=37) aaaGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCa < 1:1516927/64‑1 (MQ=255) aaaGAGATGCGCACCGCCCTGCCCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCa < 1:3550010/64‑1 (MQ=255) aaGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGtt > 1:2365429/1‑49 (MQ=255) aaGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGtt > 1:2775382/1‑49 (MQ=255) agagATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGc < 1:1145146/64‑1 (MQ=255) gagaTGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTAc > 1:3605940/1‑71 (MQ=255) gagaTGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTAc < 1:3097329/71‑1 (MQ=255) gagaTGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTAc < 1:310324/71‑1 (MQ=255) gagaTGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTAc < 1:1496044/71‑1 (MQ=255) agaTGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTAc > 1:1584550/1‑70 (MQ=255) gaTGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACga < 1:2976869/71‑1 (MQ=255) aTGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACgat > 1:470579/1‑71 (MQ=255) aTGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACgat > 1:287573/1‑71 (MQ=255) tGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACgatg < 1:2701685/71‑1 (MQ=255) tGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACgatg < 1:862798/71‑1 (MQ=255) tGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACgat < 1:1910586/70‑1 (MQ=255) tGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACgat > 1:3409216/1‑70 (MQ=255) gcgcACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAAcc < 1:1158136/55‑1 (MQ=255) gcgcACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACgatga > 1:3675885/1‑71 (MQ=255) cgcACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACgatgat < 1:1910654/71‑1 (MQ=255) gcACCGCCTTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAAcc > 1:1468432/1‑53 (MQ=255) gcACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTgg < 1:2824331/43‑1 (MQ=255) gcACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTgg < 1:3334994/43‑1 (MQ=255) gcACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATc > 1:2841569/1‑71 (MQ=255) gcACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATc < 1:2478876/71‑1 (MQ=255) cACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATcc < 1:3226478/71‑1 (MQ=255) cACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATcc < 1:350449/71‑1 (MQ=255) gCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCgct < 1:387130/71‑1 (MQ=255) tGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTaa > 1:2872006/1‑42 (MQ=255) tGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTaa > 1:3332452/1‑42 (MQ=255) gcgcACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACgat > 1:1387511/1‑57 (MQ=255) cacaCGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCgct < 1:1663504/63‑1 (MQ=255) cacGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTg < 1:2658632/71‑1 (MQ=255) cacGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTg < 1:3313285/71‑1 (MQ=255) acGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTa < 1:2950743/65‑1 (MQ=255) acGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTa < 1:3441381/65‑1 (MQ=255) acGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGt < 1:206833/71‑1 (MQ=255) cGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAg > 1:2601287/1‑38 (MQ=255) cGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAg > 1:3509447/1‑38 (MQ=255) cGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAg > 1:3243309/1‑38 (MQ=255) cGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAg > 1:403105/1‑38 (MQ=255) cAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCtt < 1:1928908/61‑1 (MQ=255) cAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTtca < 1:508416/71‑1 (MQ=255) aaaaTCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCgctgc > 1:653350/1‑58 (MQ=255) aaaaTCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTtcat > 1:2508038/1‑71 (MQ=255) aaaaTCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTtcat > 1:325199/1‑71 (MQ=255) aaaaTCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCCGCTTAATCTGTtcat > 1:3548754/1‑71 (MQ=255) aaaTCACCAATATGCAGTTTGGTGCTTTAACGAGCCTGTTTACGATGATCCCGCTACTTAATCTGTtcat < 1:1968289/70‑1 (MQ=255) aaTCACCAATATGCAGTTTGGTGCTTTAACCAGCCTg < 1:1865766/37‑1 (MQ=255) aaTCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTTATCTGTtcatca < 1:1775293/71‑1 (MQ=255) aaTCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTtcatca < 1:1950544/71‑1 (MQ=255) aTCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGtt > 1:1483373/1‑38 (MQ=255) aTCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACAATGATCCCGCTGCTTAATCTGTTcatcat < 1:2560350/71‑1 (MQ=255) cACCAAACTGCATATTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTTCATCATGc > 1:595462/1‑71 (MQ=38) cACCAAACTGCATATTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTTCATCATGc > 1:2290335/1‑71 (MQ=38) cACCAAACTGCATATTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTTCATCATGc > 1:1443657/1‑71 (MQ=38) cACCAAACTGCATATTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTTCATCATGc > 1:2769645/1‑71 (MQ=38) cACCAAACTGCATATTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTTCATCATGc > 1:1378994/1‑71 (MQ=38) cACCAAACTGCATATTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTTCATCATGc > 1:886661/1‑71 (MQ=38) cAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTTCATCATGCCCg > 1:614919/1‑71 (MQ=255) aaTATGCAGTTTGGTGCTTTAACCAGCCTGTTTACgatg < 1:38516/39‑1 (MQ=255) atatGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTTCATCATGCCCGtt > 1:3697629/1‑71 (MQ=255) atatGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTTCATCATGCCCGtt > 1:2963454/1‑71 (MQ=255) atatGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTTCATCATGCCCGtt < 1:1473135/71‑1 (MQ=255) tatGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTTCATCATGCCCGTTg < 1:511916/71‑1 (MQ=255) tatGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTTCATCATGCCCGTTg < 1:596782/71‑1 (MQ=255) tatGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTTCATCATGCCCGTTg < 1:1106105/71‑1 (MQ=255) | CCCCTTCGATAACCACAAAGTGCCGTTTAAAGAGATGCGCACCGCCCTGCGCACACGCAAAATCACCAATATGCAGTTTGGTGCTTTAACCAGCCTGTTTACGATGATCCCGCTGCTTAATCTGTTCATCATGCCCGTTG > Exported/1585078‑1585217 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |